D915_04811 (Fasciola hepatica)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 D915_04811 T198239_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.627 0.627
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.627 0.627
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.627 0.627
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.627 0.627
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D915_04811 GCM 258 395

Links

Other GCM family TFs
Other Fasciola hepatica TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_110148 Phytophthora capsici estExt_fgenesh1_pg.C_110148 N
PITG_12304 Phytophthora infestans PITG_12304 N
fgenesh_scip_prom.46568.971 Phytophthora kernoviae fgenesh_scip_prom.46568.971 N
fgenesh_scip_prom.28083.6999 Phytophthora lateralis fgenesh_scip_prom.28083.6999 N
F443_17630 Phytophthora parasitica F443_17630 N
Phyra84970 Phytophthora ramorum Phyra84970 N
Physo129327 Phytophthora sojae Physo129327 N
maker-pir_contig_233-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_233-fgenesh-gene-0.3 N
maker-piw_contig_55-fgenesh-gene-0.12 Pythium iwayamai maker-piw_contig_55-fgenesh-gene-0.12 N
PYU1_G010143 Pythium ultimum PYU1_G010143 N
maker-pve_contig_691-snap-gene-0.13 Pythium vexans maker-pve_contig_691-snap-gene-0.13 N