CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSGALG00000023129 *(Gallus gallus)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSGALG00000023129	T210279_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxa13 M00473_2.00	Mus musculus	NTTWAYDRN	NYHRTWAAN	PBM Berger et al.(2008) Hoxa13_3126	0.867	1.000
HOXA13 M03098_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_1	0.867	1.000
HOXA13 M03099_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_2	0.867	1.000
HOXA13 M03100_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_3	0.867	1.000
HOXA13 M03101_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_4	0.867	1.000
HOXA13 M04977_2.00	Homo sapiens	DTTTTATKGGB	VCCMATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_1	0.867	1.000
HOXA13 M04978_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_2	0.867	1.000
HOXA13 M04981_2.00	Homo sapiens	DTTTTATKRSN	NSYMATAAAAH	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_1	0.867	1.000
HOXA13 M04982_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_2	0.867	1.000
HOXA13 M09134_2.00	Homo sapiens	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_HUMAN.H11MO.0.C	0.867	1.000
Hoxa13 M09202_2.00	Mus musculus	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_MOUSE.H11MO.0.C	0.867	1.000
HOXA13 M10653_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_01	0.867	1.000
HOXA13 M10654_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_02	0.867	1.000
HOXA13 M04979_2.00	Homo sapiens	DTTTTATTRSN	NSYAATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_1	0.867	1.000
HOXA13 M04980_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_2	0.867	1.000
HOXA13 M04983_2.00	Homo sapiens	DKTTTATTGBN	NVCAATAAAMH	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_1	0.867	1.000
HOXA13 M04984_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_2	0.867	1.000
Hoxc13 M00389_2.00	Mus musculus	NTTWAYDRNN	NNYHRTWAAN	PBM Berger et al.(2008) Hoxc13_3127	0.862	0.930
HOXC13 M03129_2.00	Homo sapiens	NTTTTATTRS	SYAATAAAAN	SELEX Jolma et al.(2013) HOXC13_1	0.862	0.930
HOXC13 M03130_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXC13_2	0.862	0.930
HOXC13 M05072_2.00	Homo sapiens	RKTTTATKGSN	NSCMATAAAMY	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_1	0.862	0.930
HOXC13 M05073_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_2	0.862	0.930
HOXC13 M10680_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC13_Q2	0.862	0.930
HOXC13 M05074_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_Methyl-HT-SELEX	0.862	0.930
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.836	0.842
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.834	0.895
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.834	0.895
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.834	0.895
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.834	0.895
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.834	0.895
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.834	0.895
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.834	0.895
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.834	0.895
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.834	0.895
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.834	0.895
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.834	0.895
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.834	0.895
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.834	0.877
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.834	0.877
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.826	0.877
HOXD13 M00294_2.00	Homo sapiens	THGTWAAW	WTTWACDA	PBM Barrera et al.(2016) HOXD13_I322L	0.816	0.877
HOXB13 M02092_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Weirauch et al.(2014) pTH5808	0.709	0.842
Hoxb13 M00505_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb13_3479	0.709	0.842
HOXB13 M03175_2.00	Homo sapiens	DTTTTATKGG	CCMATAAAAH	SELEX Jolma et al.(2013) HOXB13_1	0.709	0.842
HOXB13 M03176_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXB13_2	0.709	0.842
HOXB13 M05201_2.00	Homo sapiens	DTTTTATKGGN	NCCMATAAAAH	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_1	0.709	0.842
HOXB13 M05202_2.00	Homo sapiens	NCTCGTAAAHH	DDTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_2	0.709	0.842
HOXB13 M09149_2.00	Homo sapiens	TTTTATDRSN	NSYHATAAAA	Misc Kulakovskiy et al.(2013) HXB13_HUMAN.H11MO.0.A	0.709	0.842
HOXB13 M05203_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_Methyl-HT-SELEX	0.709	0.842
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.611	0.544
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.611	0.544
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.611	0.544
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.611	0.544
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.611	0.544
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.611	0.544
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.611	0.544
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.611	0.544
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.611	0.544
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.611	0.544
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.611	0.544
HOXD13 M00296_2.00	Homo sapiens	GKATAAAH	DTTTATMC	PBM Barrera et al.(2016) HOXD13_Q325K	0.601	0.877
HOXD13 M00297_2.00	Homo sapiens	NWTWRKNNNN	NNNNMYWAWN	PBM Barrera et al.(2016) HOXD13_Q325R	0.601	0.877
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSGALP00000037022	Homeodomain	240	296	RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK

Links
Other Homeodomain family TFs
Other *Gallus gallus* TFs

275 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_32837	Aegilops tauschii	F775_32837	N	0.000
Aquca_022_00282	Aquilegia coerulea	Aquca_022_00282	I	0.000
VNI1	Arabidopsis lyrata	fgenesh2_kg.6__879__AT5G09330.2	N	0.000
anac103	Arabidopsis lyrata	fgenesh2_kg.8__2417__AT5G64060.1	I	0.000
anac103	Arabidopsis thaliana	AT5G64060	D	0.000
Bostr.0568s0398	Boechera stricta	Bostr.0568s0398	I	0.000
Bo2g009300	Brassica oleracea	Bo2g009300	I	0.000
Bo3g005150	Brassica oleracea	Bo3g005150	N	0.000
Bo3g101690	Brassica oleracea	Bo3g101690	I	0.000
Bo9g174090	Brassica oleracea	Bo9g174090	N	0.000
Bra009379	Brassica rapa	Bra009379	N	0.000
Bra024263	Brassica rapa	Bra024263	I	0.000
Bra028640	Brassica rapa	Bra028640	I	0.000
Cagra.0248s0087	Capsella grandiflora	Cagra.0248s0087	I	0.000
Cagra.1365s0106	Capsella grandiflora	Cagra.1365s0106	N	0.000
Carubv10026643m.g	Capsella rubella	Carubv10026643m.g	I	0.000
Carubv10001139m.g	Capsella rubella	Carubv10001139m.g	N	0.000
Ca_04187	Cicer arietinum	Ca_04187	N	0.000
Ciclev10001200m.g	Citrus clementina	Ciclev10001200m.g	N	0.000
orange1.1g036240m.g	Citrus sinensis	orange1.1g036240m.g	N	0.000
Cucsa.100920	Cucumis sativus	Cucsa.100920	N	0.000
Thhalv10013785m.g	Eutrema salsugineum	Thhalv10013785m.g	N	0.000
Thhalv10004501m.g	Eutrema salsugineum	Thhalv10004501m.g	I	0.000
gene27615-v1.0-hybrid	Fragaria vesca	gene27615-v1.0-hybrid	N	0.000
GLYMA04G39140	Glycine max	GLYMA04G39140	N	0.000
LjSGA_024981.1	Lotus japonicus	LjSGA_024981.1	N	0.000
cassava2514.valid.m1	Manihot esculenta	cassava2514.valid.m1	I	0.000
cassava2515.valid.m1	Manihot esculenta	cassava2515.valid.m1	I	0.000
cassava43226.valid.m1	Manihot esculenta	cassava43226.valid.m1	N	0.000
cassava43227.valid.m1	Manihot esculenta	cassava43227.valid.m1	N	0.000
mgf025137m	Mimulus guttatus	mgf025137m	N	0.000
GSMUA_Achr11G09000_001	Musa acuminata	GSMUA_Achr11G09000_001	N	0.000
GSMUA_Achr10G04530_001	Musa acuminata	GSMUA_Achr10G04530_001	N	0.000
GSMUA_Achr7G23330_001	Musa acuminata	GSMUA_Achr7G23330_001	N	0.000
Pavir.J02083	Panicum virgatum	Pavir.J02083	N	0.000
Pavir.J07259	Panicum virgatum	Pavir.J07259	N	0.000
PDK_20s1369501g001	Phoenix dactylifera	PDK_20s1369501g001	N	0.000
POPTR_0005s06040	Populus trichocarpa	POPTR_0005s06040	N	0.000
30136.m001048	Ricinus communis	30136.m001048	N	0.000
Si001354m.g	Setaria italica	Si001354m.g	N	0.000
Solyc11g005920.1	Solanum lycopersicum	Solyc11g005920.1	N	0.000
PGSC0003DMG400028662	Solanum tuberosum	PGSC0003DMG400028662	N	0.000
Sb09g020880	Sorghum bicolor	Sb09g020880	N	0.000
Traes_1DL_F410CF9FD	Triticum aestivum	Traes_1DL_F410CF9FD	N	0.000
Traes_1BL_9018AA7BA	Triticum aestivum	Traes_1BL_9018AA7BA	N	0.000
Traes_1AL_C4FA8404A	Triticum aestivum	Traes_1AL_C4FA8404A	N	0.000
TRIUR3_22935	Triticum urartu	TRIUR3_22935	N	0.000
VIT_04s0044g01220	Vitis vinifera	VIT_04s0044g01220	N	0.000
GRMZM2G104400	Zea mays	GRMZM2G104400	N	0.000

ENSGALG00000023129 (Gallus gallus) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

275 Related TFs

ENSGALG00000023129 **(Gallus gallus)
Homeodomain**