ENSTNIG00000002168 (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000002168 T216410_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMX3
M03233_2.00 		Homo sapiens
NNNTAAKTGNN
NNCAMTTANNN		 SELEX
Jolma et al.(2013)
HMX3_1 		0.862 0.982
HMX3
M10754_2.00 		Homo sapiens
CAAGTGCGTG
CACGCACTTG		 Transfac
Matys et al.(2006)
V$HMX1_01 		0.862 0.982
Hmx1
M00524_2.00 		Mus musculus
NHDAKYRNNN
NNNYRMTHDN		 PBM
Berger et al.(2008)
Hmx1_3423 		0.860 0.947
HMX1
M03243_2.00 		Homo sapiens
NNTTAAKTGNY
RNCAMTTAANN		 SELEX
Jolma et al.(2013)
HMX1_1 		0.860 0.947
Hmx
M03882_2.00 		Drosophila melanogaster
NYRAKYGN
NCRMTYRN		 SELEX
Nitta et al.(2015)
Hmx_1 		0.860 0.947
HMX1
M05392_2.00 		Homo sapiens
BNYAAKTGN
NCAMTTRNV		 SELEX
Yin et al.(2017)
HMX1_eDBD_HT-SELEX 		0.860 0.947
Hmx
M06554_2.00 		Drosophila melanogaster
TTAATTG
CAATTAA		 B1H
Mathelier et al.(2014)
MA0192.1 		0.860 0.947
Hmx
M06386_2.00 		Drosophila melanogaster
TTAATTG
CAATTAA		 B1H
Zhu et al.(2011)
Hmx_Cell_FBgn0085448 		0.860 0.947
Hmx
M06387_2.00 		Drosophila melanogaster
TTAATTG
CAATTAA		 B1H
Zhu et al.(2011)
Hmx_SOLEXA_FBgn0085448 		0.860 0.947
HMX1
M05393_2.00 		Homo sapiens
VNYAAKTGB
VCAMTTRNB		 SELEX
Yin et al.(2017)
HMX1_eDBD_Methyl-HT-SELEX 		0.860 0.947
Hmx3_CONSTRUCT
M00537_2.00 		PBM CONSTRUCTS
NHDADYRNN
NNYRHTHDN		 PBM
Berger et al.(2008)
Hmx3_3490 		0.849 0.965
Hmx2
M00507_2.00 		Mus musculus
NHRANYGNNN
NNNCRNTYDN		 PBM
Berger et al.(2008)
Hmx2_3424 		0.841 0.895
HMX2
M03234_2.00 		Homo sapiens
NNTTAAKTGNN
NNCAMTTAANN		 SELEX
Jolma et al.(2013)
HMX2_1 		0.841 0.895
HMX2
M05373_2.00 		Homo sapiens
GNHRAKYGS
SCRMTYDNC		 SELEX
Yin et al.(2017)
HMX2_eDBD_HT-SELEX 		0.841 0.895
HMX2
M05375_2.00 		Homo sapiens
NTTAAKTGNN
NNCAMTTAAN		 SELEX
Yin et al.(2017)
HMX2_FL_HT-SELEX 		0.841 0.895
HMX2
M05374_2.00 		Homo sapiens
NNTAAKTGN
NCAMTTANN		 SELEX
Yin et al.(2017)
HMX2_eDBD_Methyl-HT-SELEX 		0.841 0.895
HMX2
M05376_2.00 		Homo sapiens
NTTAAKTGNN
NNCAMTTAAN		 SELEX
Yin et al.(2017)
HMX2_FL_Methyl-HT-SELEX 		0.841 0.895
HOXC4
M00330_2.00 		Homo sapiens
YTAATTRB
VYAATTAR		 PBM
Barrera et al.(2016)
HOXC4_REF 		0.692 0.526
Hoxc4
M00530_2.00 		Mus musculus
NWAATNDNN
NNHNATTWN		 PBM
Berger et al.(2008)
Hoxc4_3491 		0.692 0.526
HOXC4
M05385_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX 		0.692 0.526
HOXC4
M00328_2.00 		Homo sapiens
YTAATTAB
VTAATTAR		 PBM
Barrera et al.(2016)
HOXC4_N178S 		0.692 0.526
HOXC4
M00329_2.00 		Homo sapiens
NTAATKRNN
NNYMATTAN		 PBM
Barrera et al.(2016)
HOXC4_R158L 		0.692 0.526
HOXC4
M05386_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1 		0.692 0.526
HOXC4
M05387_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2 		0.692 0.526
TLX2
M02087_2.00 		Homo sapiens
NYRDNNNNNN
NNNNNNHYRN		 PBM
Weirauch et al.(2014)
pTH6482 		0.686 0.614
Tlx2
M00526_2.00 		Mus musculus
WTTAAWTA
TAWTTAAW		 PBM
Berger et al.(2008)
Tlx2_3498 		0.686 0.614
TLX2
M05020_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
TLX2_eDBD_HT-SELEX 		0.686 0.614
TLX2
M10672_2.00 		Homo sapiens
BNGTAAKDNB
VNHMTTACNV		 Transfac
Matys et al.(2006)
V$NCX_01 		0.686 0.614
TLX2
M05021_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
TLX2_eDBD_Methyl-HT-SELEX 		0.686 0.614
C15
M06505_2.00 		Drosophila melanogaster
TTAAWKR
YMWTTAA		 B1H
Mathelier et al.(2014)
MA0170.1 		0.686 0.579
C15
M06289_2.00 		Drosophila melanogaster
BTTAAWKR
YMWTTAAV		 B1H
Zhu et al.(2011)
C15_Cell_FBgn0004863 		0.686 0.579
C15
M06290_2.00 		Drosophila melanogaster
NWTAAWKR
YMWTTAWN		 B1H
Zhu et al.(2011)
C15_SOLEXA_FBgn0004863 		0.686 0.579
Hoxa4
M00383_2.00 		Mus musculus
NTAATBDNN
NNHVATTAN		 PBM
Berger et al.(2008)
Hoxa4_3426 		0.680 0.526
HOXA4
M05381_2.00 		Homo sapiens
NTAATKRY
RYMATTAN		 SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX 		0.680 0.526
HOXA4
M10755_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA4_Q2 		0.680 0.526
HOXA4
M05382_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX 		0.680 0.526
Hoxb4
M00479_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Hoxb4_2627 		0.680 0.509
HOXB4
M05343_2.00 		Homo sapiens
YTAATKAY
RTMATTAR		 SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX 		0.680 0.509
HOXD4
M05273_2.00 		Homo sapiens
NTMATKRV
BYMATKAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX 		0.680 0.509
HOXD4
M05276_2.00 		Homo sapiens
NTAATKRB
VYMATTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX 		0.680 0.509
HOXB4
M09162_2.00 		Homo sapiens
YTAATKRS
SYMATTAR		 Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B 		0.680 0.509
Hoxb4
M09204_2.00 		Mus musculus
YTAATKRS
SYMATTAR		 Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A 		0.680 0.509
Hoxb4
M09576_2.00 		Mus musculus
TGATDRATKRSN
NSYMATYHATCA		 Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014 		0.680 0.509
HOXB4
M05344_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1 		0.680 0.509
HOXB4
M05345_2.00 		Homo sapiens
HTAAYKAB
VTMRTTAD		 SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2 		0.680 0.509
HOXD4
M05274_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1 		0.680 0.509
HOXD4
M05275_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2 		0.680 0.509
HOXD4
M05277_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1 		0.680 0.509
HOXD4
M05278_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2 		0.680 0.509
lin-39
M08211_2.00 		Caenorhabditis elegans
GATTGATG
CATCAATC		 ChIP-seq
Contrino et al.(2012)
Mw154 		0.671 0.526
lin-39
M09582_2.00 		Caenorhabditis elegans
DTGATWRATK
MATYWATCAH		 Misc
Heinz et al.(2010)
cElegans.L3-LIN39_modEncode 		0.671 0.526
lms
M03863_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
CG13424_1 		0.653 0.579
lms
M03864_2.00 		Drosophila melanogaster
HTWATTRDWTDATTRR
YYAATHAWHYAATWAD		 SELEX
Nitta et al.(2015)
lms_1 		0.653 0.579
lms
M06536_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Mathelier et al.(2014)
MA0175.1 		0.653 0.579
lms
M06347_2.00 		Drosophila melanogaster
NYTAATKR
YMATTARN		 B1H
Zhu et al.(2011)
CG13424_Cell_FBgn0034520 		0.653 0.579
lms
M06348_2.00 		Drosophila melanogaster
NNHTAATDRN
NYHATTADNN		 B1H
Zhu et al.(2011)
CG13424_SOLEXA_2_FBgn0034520 		0.653 0.579
lms
M06349_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
CG13424_SOLEXA_FBgn0034520 		0.653 0.579
TLX3
M05233_2.00 		Homo sapiens
NAATKGNNNNNNNNNNNNNCAATTN
NAATTGNNNNNNNNNNNNNCMATTN		 SELEX
Yin et al.(2017)
TLX3_eDBD_HT-SELEX 		0.652 0.596
TLX3
M05235_2.00 		Homo sapiens
NAATTGNNNNNHNNNNCAATTN
NAATTGNNNNDNNNNNCAATTN		 SELEX
Yin et al.(2017)
TLX3_FL_HT-SELEX 		0.652 0.596
TLX3
M05234_2.00 		Homo sapiens
NAATTGNNNNNNNNNNDCAATTD
HAATTGHNNNNNNNNNNCAATTN		 SELEX
Yin et al.(2017)
TLX3_eDBD_Methyl-HT-SELEX 		0.652 0.596
TLX3
M05236_2.00 		Homo sapiens
HAATTRNNNNNNNNNYHATTV
BAATDRNNNNNNNNNYAATTD		 SELEX
Yin et al.(2017)
TLX3_FL_Methyl-HT-SELEX 		0.652 0.596
MSX2
M00290_2.00 		Homo sapiens
WDATNDNN
NNHNATHW		 PBM
Barrera et al.(2016)
MSX2_REF 		0.644 0.614
Msx2
M00414_2.00 		Mus musculus
HRATKRNN
NNYMATYD		 PBM
Berger et al.(2008)
Msx2_3449 		0.644 0.614
MSX2
M03127_2.00 		Homo sapiens
TAATTRBHWKWTAATTGV
BCAATTAWMWDVYAATTA		 SELEX
Jolma et al.(2013)
MSX2_1 		0.644 0.614
MSX2
M03128_2.00 		Homo sapiens
NTAATTGB
VCAATTAN		 SELEX
Jolma et al.(2013)
MSX2_2 		0.644 0.614
MSX2
M05060_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX 		0.644 0.614
MSX2
M10677_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q3 		0.644 0.614
MSX2
M10678_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q6 		0.644 0.614
MSX2
M00288_2.00 		Homo sapiens
NTAATNDN
NHNATTAN		 PBM
Barrera et al.(2016)
MSX2_P148H 		0.644 0.614
MSX2
M05061_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1 		0.644 0.614
MSX2
M05062_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2 		0.644 0.614
Msx3
M00429_2.00 		Mus musculus
TAATKDNN
NNHMATTA		 PBM
Berger et al.(2008)
Msx3_3206 		0.644 0.596
Msx1
M00501_2.00 		Mus musculus
NHDATND
HNATHDN		 PBM
Berger et al.(2008)
Msx1_3031 		0.644 0.596
Dr
M00555_2.00 		Drosophila melanogaster
TAATTRNN
NNYAATTA		 PBM
Busser et al.(2012a)
Msh 		0.644 0.596
MSX1
M03184_2.00 		Homo sapiens
TAATTRBHHNHTAATTRN
NYAATTADNDDVYAATTA		 SELEX
Jolma et al.(2013)
MSX1_1 		0.644 0.596
MSX1
M03185_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_2 		0.644 0.596
MSX1
M03186_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_3 		0.644 0.596
Msx3
M03255_2.00 		Mus musculus
TAATTGSHHNNTAATTRN
NYAATTANNDDSCAATTA		 SELEX
Jolma et al.(2013)
Msx3_1 		0.644 0.596
Msx3
M03256_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Msx3_2 		0.644 0.596
MSX1
M05221_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX 		0.644 0.596
MSX1
M05224_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX 		0.644 0.596
Dr
M06482_2.00 		Drosophila melanogaster
TAATTGS
SCAATTA		 B1H
Mathelier et al.(2014)
MA0188.1 		0.644 0.596
Dr
M06229_2.00 		Drosophila melanogaster
TAATTGSHB
VDSCAATTA		 B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492 		0.644 0.596
Dr
M06230_2.00 		Drosophila melanogaster
TAATTR
YAATTA		 B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492 		0.644 0.596
MSX1
M10715_2.00 		Homo sapiens
HNBTWWNTG
CANWWAVND		 Transfac
Matys et al.(2006)
V$MSX1_01 		0.644 0.596
MSX1
M10716_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5_01 		0.644 0.596
MSX1
M10717_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5 		0.644 0.596
MSX1
M05222_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1 		0.644 0.596
MSX1
M05223_2.00 		Homo sapiens
NTWAYGMB
VKCRTWAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2 		0.644 0.596
MSX1
M05225_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1 		0.644 0.596
MSX1
M05226_2.00 		Homo sapiens
NTWAYGWB
VWCRTWAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2 		0.644 0.596
SPU_026099
M02175_2.00 		Strongylocentrotus purpuratus
KTAATTRB
VYAATTAM		 PBM
Weirauch et al.(2014)
pTH6140 		0.643 0.526
Pdx1
M00446_2.00 		Mus musculus
NWRAYNNN
NNNRTYWN		 PBM
Berger et al.(2008)
Ipf1_3815 		0.643 0.509
PDX1
M03155_2.00 		Homo sapiens
NTAATTRNNNYTAATTRN
NYAATTARNNNYAATTAN		 SELEX
Jolma et al.(2013)
PDX1_1 		0.643 0.509
PDX1
M03156_2.00 		Homo sapiens
BTAATKRN
NYMATTAV		 SELEX
Jolma et al.(2013)
PDX1_2 		0.643 0.509
PDX1
M05161_2.00 		Homo sapiens
YTAATKRB
VYMATTAR		 SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX 		0.643 0.509
PDX1
M09147_2.00 		Homo sapiens
TGATWGATK
MATCWATCA		 Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A 		0.643 0.509
Pdx1
M09192_2.00 		Mus musculus
VYTAATGRB
VYCATTARB		 Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B 		0.643 0.509
Pdx1
M09571_2.00 		Mus musculus
TGATTRATKR
YMATYAATCA		 Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281 		0.643 0.509
PDX1
M10699_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_01 		0.643 0.509
PDX1
M10700_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_02 		0.643 0.509
PDX1
M10701_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_03 		0.643 0.509
PDX1
M10702_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_04 		0.643 0.509
PDX1
M10703_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_05 		0.643 0.509
PDX1
M10704_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q4_01 		0.643 0.509
PDX1
M10705_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q4 		0.643 0.509
PDX1
M10706_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q5_01 		0.643 0.509
PDX1
M10707_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q5 		0.643 0.509
PDX1
M10708_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q6 		0.643 0.509
PDX1
M05162_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1 		0.643 0.509
PDX1
M05163_2.00 		Homo sapiens
YTAATKRB
VYMATTAR		 SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2 		0.643 0.509
NK7.1
M03847_2.00 		Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB		 SELEX
Nitta et al.(2015)
NK7.1_1 		0.640 0.614
NK7.1
M03848_2.00 		Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN		 SELEX
Nitta et al.(2015)
NK7.1_2 		0.640 0.614
NK7.1
M06524_2.00 		Drosophila melanogaster
TTAATDR
YHATTAA		 B1H
Mathelier et al.(2014)
MA0196.1 		0.640 0.614
NK7.1
M06323_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321 		0.640 0.614
NK7.1
M06324_2.00 		Drosophila melanogaster
YTAATDR
YHATTAR		 B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321 		0.640 0.614
MSX2
M00289_2.00 		Homo sapiens
WDATWDNN
NNHWATHW		 PBM
Barrera et al.(2016)
MSX2_R172H 		0.636 0.596
Scr
M03799_2.00 		Drosophila melanogaster
BTAATKRB
VYMATTAV		 SELEX
Nitta et al.(2015)
Scr_1 		0.635 0.509
Scr
M06496_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0203.1 		0.635 0.509
Scr
M06266_2.00 		Drosophila melanogaster
HVYTAATKA
TMATTARBD		 B1H
Zhu et al.(2011)
Scr_Cell_FBgn0003339 		0.635 0.509
Scr
M06267_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
Scr_SOLEXA_FBgn0003339 		0.635 0.509
Hoxc5
M00422_2.00 		Mus musculus
NWRATND
HNATYWN		 PBM
Berger et al.(2008)
Hoxc5_2630 		0.635 0.491
Hoxa5
M00478_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Hoxa5_3415 		0.635 0.491
Hoxb5
M00480_2.00 		Mus musculus
NWDWTNNNN
NNNNAWHWN		 PBM
Berger et al.(2008)
Hoxb5_3122 		0.635 0.491
HOXB5
M03125_2.00 		Homo sapiens
NNKAATKRNN
NNYMATTMNN		 SELEX
Jolma et al.(2013)
HOXB5_1 		0.635 0.491
Dfd
M03784_2.00 		Drosophila melanogaster
VNTAAYKRBN
NVYMRTTANB		 SELEX
Nitta et al.(2015)
Dfd_1 		0.635 0.491
Dfd
M03785_2.00 		Drosophila melanogaster
VYTAATKAYN
NRTMATTARB		 SELEX
Nitta et al.(2015)
Dfd_2 		0.635 0.491
HOXA5
M04968_2.00 		Homo sapiens
STAATKRS
SYMATTAS		 SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX 		0.635 0.491
HOXA5
M04971_2.00 		Homo sapiens
NTMATKRB
VYMATKAN		 SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX 		0.635 0.491
HOXB5
M05051_2.00 		Homo sapiens
NTAATKRV
BYMATTAN		 SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX 		0.635 0.491
HOXB5
M05054_2.00 		Homo sapiens
STMATKAB
VTMATKAS		 SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX 		0.635 0.491
Dfd
M06481_2.00 		Drosophila melanogaster
YTAATGA
TCATTAR		 B1H
Mathelier et al.(2014)
MA0186.1 		0.635 0.491
Dfd
M06226_2.00 		Drosophila melanogaster
VYTAATGA
TCATTAAB		 B1H
Zhu et al.(2011)
Dfd_Cell_FBgn0000439 		0.635 0.491
Dfd
M06227_2.00 		Drosophila melanogaster
TTAATKRY
RYMATTAA		 B1H
Zhu et al.(2011)
Dfd_FlyReg_FBgn0000439 		0.635 0.491
Dfd
M06228_2.00 		Drosophila melanogaster
NBTAATKR
YMATTAVN		 B1H
Zhu et al.(2011)
Dfd_SOLEXA_FBgn0000439 		0.635 0.491
Dfd
M09675_2.00 		Drosophila melanogaster
TTAATKRB
VYMATTAA		 Misc
Kulakovskiy et al.(2009)
Dfd 		0.635 0.491
Dfd
M10784_2.00 		Drosophila melanogaster
NNNNRKTAATNNNNNN
NNNNNNATTAMYNNNN		 Transfac
Matys et al.(2006)
I$DFD_01 		0.635 0.491
HOXA5
M10652_2.00 		Homo sapiens
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR
YSCHHHBHYCYYMATTABTVNDHVMVHYCN		 Transfac
Matys et al.(2006)
V$HOX13_01 		0.635 0.491
HOXA5
M08457_2.00 		Homo sapiens
CDBWAATK
MATTWVHG		 COMPILED
Mathelier et al.(2014)
MA0158.1 		0.635 0.491
HOXA5
M04969_2.00 		Homo sapiens
BTAATKRV
BYMATTAV		 SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1 		0.635 0.491
HOXA5
M04970_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2 		0.635 0.491
HOXA5
M04972_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1 		0.635 0.491
HOXA5
M04973_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2 		0.635 0.491
HOXB5
M05052_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1 		0.635 0.491
HOXB5
M05053_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2 		0.635 0.491
HOXB5
M05055_2.00 		Homo sapiens
NTMATKAB
VTMATKAN		 SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1 		0.635 0.491
HOXB5
M05056_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2 		0.635 0.491
MEOX2
M03103_2.00 		Homo sapiens
NNTRATKASN
NSTMATYANN		 SELEX
Jolma et al.(2013)
MEOX2_1 		0.632 0.509
MEOX2
M03104_2.00 		Homo sapiens
NTAATTANVNTAATTAV
BTAATTANBNTAATTAN		 SELEX
Jolma et al.(2013)
MEOX2_2 		0.632 0.509
MEOX2
M03105_2.00 		Homo sapiens
HTAATGATGATKAN
NTMATCATCATTAD		 SELEX
Jolma et al.(2013)
MEOX2_3 		0.632 0.509
Meox2
M03271_2.00 		Mus musculus
NTAATKAN
NTMATTAN		 SELEX
Jolma et al.(2013)
Meox2_1 		0.632 0.509
MEOX2
M04988_2.00 		Homo sapiens
NTDAYGHB
VDCRTHAN		 SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_1 		0.632 0.509
MEOX2
M04989_2.00 		Homo sapiens
NTVATBRV
BYVATBAN		 SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_2 		0.632 0.509
Meox2
M10771_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEOX2_05 		0.632 0.509
MEOX2
M04990_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_1 		0.632 0.509
MEOX2
M04991_2.00 		Homo sapiens
NTVATKRN
NYMATBAN		 SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_2 		0.632 0.509
Meox1
M00384_2.00 		Mus musculus
NTRATKRNN
NNYMATYAN		 PBM
Berger et al.(2008)
Meox1_2310 		0.632 0.491
MEOX1
M03077_2.00 		Homo sapiens
NNTAATTASN
NSTAATTANN		 SELEX
Jolma et al.(2013)
MEOX1_1 		0.632 0.491
MEOX1
M04901_2.00 		Homo sapiens
NTDAYGHB
VDCRTHAN		 SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1 		0.632 0.491
MEOX1
M04902_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2 		0.632 0.491
MEOX1
M04903_2.00 		Homo sapiens
NTAAYGWB
VWCRTTAN		 SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1 		0.632 0.491
MEOX1
M04904_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2 		0.632 0.491
Emx2
M00495_2.00 		Mus musculus
NTAATDDNN
NNHHATTAN		 PBM
Berger et al.(2008)
Emx2_3420 		0.631 0.579
EMX2
M03210_2.00 		Homo sapiens
NBTAATTANN
NNTAATTAVN		 SELEX
Jolma et al.(2013)
EMX2_1 		0.631 0.579
EMX2
M03211_2.00 		Homo sapiens
YMATTARBTAATKR
YMATTAVYTAATKR		 SELEX
Jolma et al.(2013)
EMX2_2 		0.631 0.579
EMX2
M05281_2.00 		Homo sapiens
YTAATKAB
VTMATTAR		 SELEX
Yin et al.(2017)
EMX2_eDBD_HT-SELEX 		0.631 0.579
EMX2
M05282_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Yin et al.(2017)
EMX2_eDBD_Methyl-HT-SELEX 		0.631 0.579
EMX1
M02088_2.00 		Homo sapiens
NNTAATKANN
NNTMATTANN		 PBM
Weirauch et al.(2014)
pTH5677 		0.631 0.561
EMX1
M03151_2.00 		Homo sapiens
NBTAATTRNN
NNYAATTAVN		 SELEX
Jolma et al.(2013)
EMX1_1 		0.631 0.561
EMX1
M03152_2.00 		Homo sapiens
YMATTARYTAATKR
YMATTARYTAATKR		 SELEX
Jolma et al.(2013)
EMX1_2 		0.631 0.561
EMX1
M05145_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
EMX1_eDBD_HT-SELEX 		0.631 0.561
EMX1
M05147_2.00 		Homo sapiens
BTAATTAV
BTAATTAV		 SELEX
Yin et al.(2017)
EMX1_FL_HT-SELEX 		0.631 0.561
EMX1
M05146_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
EMX1_eDBD_Methyl-HT-SELEX 		0.631 0.561
EMX1
M05148_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
EMX1_FL_Methyl-HT-SELEX 		0.631 0.561
Mnx1
M00388_2.00 		Mus musculus
NTAATBDNNN
NNNHVATTAN		 PBM
Berger et al.(2008)
Hlxb9_3422 		0.629 0.561
MNX1
M03143_2.00 		Homo sapiens
NHTAATTRNH
DNYAATTADN		 SELEX
Jolma et al.(2013)
MNX1_1 		0.629 0.561
unpg
M03836_2.00 		Drosophila melanogaster
SSTAATYRVN
NBYRATTASS		 SELEX
Nitta et al.(2015)
unpg_1 		0.629 0.561
MNX1
M05126_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MNX1_eDBD_HT-SELEX 		0.629 0.561
unpg
M06517_2.00 		Drosophila melanogaster
BTAATTR
YAATTAV		 B1H
Mathelier et al.(2014)
MA0251.1 		0.629 0.561
unpg
M06311_2.00 		Drosophila melanogaster
NBTAATTR
YAATTAVN		 B1H
Zhu et al.(2011)
Unpg_Cell_FBgn0015561 		0.629 0.561
unpg
M06312_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Unpg_SOLEXA_FBgn0015561 		0.629 0.561
MNX1
M05127_2.00 		Homo sapiens
HTAAYGHB
VDCRTTAD		 SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_1 		0.629 0.561
MNX1
M05128_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_2 		0.629 0.561
VENTX
M02091_2.00 		Homo sapiens
TTAATTAB
VTAATTAA		 PBM
Weirauch et al.(2014)
pTH5490 		0.627 0.491
VENTX
M00305_2.00 		Homo sapiens
DTAATTRR
YYAATTAH		 PBM
Barrera et al.(2016)
VENTX_REF 		0.627 0.491
VENTX
M03169_2.00 		Homo sapiens
YTAATBGNT
ANCVATTAR		 SELEX
Jolma et al.(2013)
VENTX_1 		0.627 0.491
VENTX
M03170_2.00 		Homo sapiens
VSYTAATSGRWAAMCGATTAG
CTAATCGKTTWYCSATTARSB		 SELEX
Jolma et al.(2013)
VENTX_2 		0.627 0.491
VENTX
M05188_2.00 		Homo sapiens
CGHTAATBG
CVATTADCG		 SELEX
Yin et al.(2017)
VENTX_FL_HT-SELEX_1 		0.627 0.491
VENTX
M05189_2.00 		Homo sapiens
VNTAATBRNN
NNYVATTANB		 SELEX
Yin et al.(2017)
VENTX_FL_HT-SELEX_2 		0.627 0.491
VENTX
M00303_2.00 		Homo sapiens
NVTAATTANNN
NNNTAATTABN		 PBM
Barrera et al.(2016)
VENTX_E101K 		0.627 0.491
VENTX
M05190_2.00 		Homo sapiens
VHTAATKRNN
NNYMATTADB		 SELEX
Yin et al.(2017)
VENTX_FL_Methyl-HT-SELEX 		0.627 0.491
VENTX
M00304_2.00 		Homo sapiens
NATAYATAB
VTATRTATN		 PBM
Barrera et al.(2016)
VENTX_R143C 		0.627 0.474
Q0N4M8_NEMVE
M02166_2.00 		Nematostella vectensis
HTAATKAC
GTMATTAD		 PBM
Weirauch et al.(2014)
pTH6215 		0.624 0.491
repo
M03826_2.00 		Drosophila melanogaster
VTTAATTARB
VYTAATTAAB		 SELEX
Nitta et al.(2015)
repo_1 		0.620 0.456
repo
M03827_2.00 		Drosophila melanogaster
VKYAATTRRN
NYYAATTRMB		 SELEX
Nitta et al.(2015)
repo_2 		0.620 0.456
repo
M03828_2.00 		Drosophila melanogaster
VBYAATTRVNNBYAATTRVB
VBYAATTRVNNBYAATTRVB		 SELEX
Nitta et al.(2015)
repo_3 		0.620 0.456
repo
M06511_2.00 		Drosophila melanogaster
TTAATTA
TAATTAA		 B1H
Mathelier et al.(2014)
MA0240.1 		0.620 0.456
repo
M06301_2.00 		Drosophila melanogaster
DTTAATTA
TAATTAAH		 B1H
Zhu et al.(2011)
Repo_Cell_FBgn0011701 		0.620 0.456
repo
M06302_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
Repo_SOLEXA_FBgn0011701 		0.620 0.456
Bsx
M00516_2.00 		Mus musculus
NTAAYBDNN
NNHVRTTAN		 PBM
Berger et al.(2008)
Bsx_3483 		0.620 0.614
BSX
M03235_2.00 		Homo sapiens
NTAATBRN
NYVATTAN		 SELEX
Jolma et al.(2013)
BSX_1 		0.620 0.614
BSX
M05377_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1 		0.620 0.614
BSX
M05378_2.00 		Homo sapiens
BTAATBRV
BYVATTAV		 SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2 		0.620 0.614
BSX
M05379_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1 		0.620 0.614
BSX
M05380_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2 		0.620 0.614
ems
M02114_2.00 		Drosophila melanogaster
NTAATKRNB
VNYMATTAN		 PBM
Weirauch et al.(2014)
pTH5673 		0.619 0.544
E5
M03814_2.00 		Drosophila melanogaster
STAATKNN
NNMATTAS		 SELEX
Nitta et al.(2015)
E5_1 		0.619 0.544
ems
M03789_2.00 		Drosophila melanogaster
BTAATTAN
NTAATTAV		 SELEX
Nitta et al.(2015)
ems_1 		0.619 0.544
ems
M03790_2.00 		Drosophila melanogaster
BTAATTAVBVBTAATKRN
NYMATTAVBVBTAATTAV		 SELEX
Nitta et al.(2015)
ems_2 		0.619 0.544
ems
M03791_2.00 		Drosophila melanogaster
BTAATKRN
NYMATTAV		 SELEX
Nitta et al.(2015)
ems_3 		0.619 0.544
ems
M03792_2.00 		Drosophila melanogaster
STAATKRSSSSTAATKRV
BYMATTASSSSYMATTAS		 SELEX
Nitta et al.(2015)
ems_4 		0.619 0.544
ems
M06484_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Mathelier et al.(2014)
MA0219.1 		0.619 0.544
E5
M06507_2.00 		Drosophila melanogaster
BTAATKA
TMATTAV		 B1H
Mathelier et al.(2014)
MA0189.1 		0.619 0.544
E5
M06293_2.00 		Drosophila melanogaster
NBTAATKA
TMATTAVN		 B1H
Zhu et al.(2011)
E5_Cell_FBgn0008646 		0.619 0.544
E5
M06294_2.00 		Drosophila melanogaster
NTAATDR
YHATTAN		 B1H
Zhu et al.(2011)
E5_SOLEXA_FBgn0008646 		0.619 0.544
ems
M06233_2.00 		Drosophila melanogaster
WHTAATKR
YMATTADW		 B1H
Zhu et al.(2011)
Ems_Cell_FBgn0000576 		0.619 0.544
ems
M06234_2.00 		Drosophila melanogaster
TSTMATHM
KDATKASA		 B1H
Zhu et al.(2011)
ems_FlyReg_FBgn0000576 		0.619 0.544
ems
M06235_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
Ems_SOLEXA_FBgn0000576 		0.619 0.544
ems
M09676_2.00 		Drosophila melanogaster
WTWATGA
TCATWAW		 Misc
Kulakovskiy et al.(2009)
ems 		0.619 0.544
Gbx2
M00462_2.00 		Mus musculus
NNDAHNN
NNDTHNN		 PBM
Berger et al.(2008)
Gbx2_3110 		0.617 0.544
Gbx1
M00525_2.00 		Mus musculus
NNTAATNR
YNATTANN		 PBM
Berger et al.(2008)
Gbx1_2883 		0.617 0.544
GBX1
M03193_2.00 		Homo sapiens
NBTAATTRSB
VSYAATTAVN		 SELEX
Jolma et al.(2013)
GBX1_1 		0.617 0.544
GBX2
M03201_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
GBX2_1 		0.617 0.544
GBX2
M03202_2.00 		Homo sapiens
TAATTRVBCAATWA
TWATTGVBYAATTA		 SELEX
Jolma et al.(2013)
GBX2_2 		0.617 0.544
GBX2
M03203_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
GBX2_3 		0.617 0.544
Gbx1
M03286_2.00 		Mus musculus
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
Gbx1_1 		0.617 0.544
Gbx2
M03268_2.00 		Mus musculus
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
Gbx2_1 		0.617 0.544
GBX2
M05265_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
GBX2_eDBD_HT-SELEX 		0.617 0.544
GBX2
M05268_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
GBX2_FL_HT-SELEX 		0.617 0.544
GBX2
M05266_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
GBX2_eDBD_Methyl-HT-SELEX_1 		0.617 0.544
GBX2
M05267_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
GBX2_eDBD_Methyl-HT-SELEX_2 		0.617 0.544
GBX2
M05269_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
GBX2_FL_Methyl-HT-SELEX_1 		0.617 0.544
GBX2
M05270_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
GBX2_FL_Methyl-HT-SELEX_2 		0.617 0.544
exex
M03871_2.00 		Drosophila melanogaster
NNNNYAATTNNYDN
NHRNNAATTRNNNN		 SELEX
Nitta et al.(2015)
exex_1 		0.617 0.526
exex
M06544_2.00 		Drosophila melanogaster
BTAATTA
TAATTAV		 B1H
Mathelier et al.(2014)
MA0224.1 		0.617 0.526
exex
M06364_2.00 		Drosophila melanogaster
TAATTAV
BTAATTA		 B1H
Zhu et al.(2011)
Exex_Cell_FBgn0041156 		0.617 0.526
exex
M06365_2.00 		Drosophila melanogaster
TAATBR
YVATTA		 B1H
Zhu et al.(2011)
Exex_SOLEXA_FBgn0041156 		0.617 0.526
Nkx1-1
M00442_2.00 		Mus musculus
NNTAATNDNN
NNHNATTANN		 PBM
Berger et al.(2008)
Nkx1-1_3856 		0.616 0.596
Nkx1-2
M00503_2.00 		Mus musculus
NNTAAWNDN
NHNWTTANN		 PBM
Berger et al.(2008)
Nkx1-2_3214 		0.616 0.596
slou
M00557_2.00 		Drosophila melanogaster
NNTAATDRN
NYHATTANN		 PBM
Busser et al.(2012a)
Slou 		0.616 0.596
slou
M03798_2.00 		Drosophila melanogaster
VBTAATTRSB
VSYAATTAVB		 SELEX
Nitta et al.(2015)
slou_1 		0.616 0.596
slou
M06494_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Mathelier et al.(2014)
MA0245.1 		0.616 0.596
slou
M06262_2.00 		Drosophila melanogaster
BYTAATKR
YMATTARV		 B1H
Zhu et al.(2011)
Slou_Cell_FBgn0002941 		0.616 0.596
slou
M06263_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Zhu et al.(2011)
Slou_SOLEXA_FBgn0002941 		0.616 0.596
bsh
M02113_2.00 		Drosophila melanogaster
NNTAAYBDNN
NNHVRTTANN		 PBM
Weirauch et al.(2014)
pTH6569 		0.616 0.579
bsh
M03786_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
bsh_1 		0.616 0.579
bsh
M03787_2.00 		Drosophila melanogaster
TAATTRVWTAATKR
YMATTAWBYAATTA		 SELEX
Nitta et al.(2015)
bsh_2 		0.616 0.579
bsh
M03788_2.00 		Drosophila melanogaster
NTAATBRN
NYVATTAN		 SELEX
Nitta et al.(2015)
bsh_3 		0.616 0.579
bsh
M06483_2.00 		Drosophila melanogaster
YTAATBR
YVATTAR		 B1H
Mathelier et al.(2014)
MA0214.1 		0.616 0.579
bsh
M06231_2.00 		Drosophila melanogaster
HYTAATBRV
BYVATTARD		 B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529 		0.616 0.579
bsh
M06232_2.00 		Drosophila melanogaster
NTAATKR
YMATTAN		 B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529 		0.616 0.579
btn
M03832_2.00 		Drosophila melanogaster
NNTAATKANB
VNTMATTANN		 SELEX
Nitta et al.(2015)
btn_1 		0.615 0.526
btn
M03833_2.00 		Drosophila melanogaster
VNTAATKABN
NVTMATTANB		 SELEX
Nitta et al.(2015)
btn_2 		0.615 0.526
btn
M06515_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0215.1 		0.615 0.526
btn
M06307_2.00 		Drosophila melanogaster
NDTAATKA
TMATTAHN		 B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949 		0.615 0.526
btn
M06308_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949 		0.615 0.526
Hoxd3
M00531_2.00 		Mus musculus
NTAATNDN
NHNATTAN		 PBM
Berger et al.(2008)
Hoxd3_1742 		0.615 0.474
Hoxa3
M00172_2.00 		Mus musculus
NTAATKRNNN
NNNYMATTAN		 PBM
Badis et al.(2009)
Hoxa3_2783 		0.615 0.474
Hoxa3
M00532_2.00 		Mus musculus
NTAATKRNN
NNYMATTAN		 PBM
Berger et al.(2008)
Hoxa3_2783 		0.615 0.474
Hoxd3
M03287_2.00 		Mus musculus
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
Hoxd3_1 		0.615 0.474
HOXD3
M05101_2.00 		Homo sapiens
CTAATTAS
STAATTAG		 SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX 		0.615 0.474
HOXA3
M10651_2.00 		Homo sapiens
SVTWNDDKB
VMHHNWABS		 Transfac
Matys et al.(2006)
V$HOXA3_01 		0.615 0.474
HOXD3
M05102_2.00 		Homo sapiens
YTAAYGAY
RTCRTTAR		 SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1 		0.615 0.474
HOXD3
M05103_2.00 		Homo sapiens
CTAATKAC
GTMATTAG		 SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2 		0.615 0.474
Hoxb3
M00504_2.00 		Mus musculus
NTAATKRNN
NNYMATTAN		 PBM
Berger et al.(2008)
Hoxb3_1720 		0.615 0.456
HOXB3
M03126_2.00 		Homo sapiens
NBTAATKRNN
NNYMATTAVN		 SELEX
Jolma et al.(2013)
HOXB3_1 		0.615 0.456
Barhl1
M00433_2.00 		Mus musculus
NTAAWNRNN
NNYNWTTAN		 PBM
Berger et al.(2008)
Barhl1_2590 		0.613 0.579
Barhl1
M03258_2.00 		Mus musculus
NNTAAWYGNH
DNCRWTTANN		 SELEX
Jolma et al.(2013)
Barhl1_1 		0.613 0.579
Barhl1
M03259_2.00 		Mus musculus
NNTAADNRNN
NNYNHTTANN		 SELEX
Jolma et al.(2013)
Barhl1_2 		0.613 0.579
Barhl1
M03260_2.00 		Mus musculus
TAAWYGNYNNTAAWYG
CRWTTANNRNCRWTTA		 SELEX
Jolma et al.(2013)
Barhl1_3 		0.613 0.579
BARHL1
M05091_2.00 		Homo sapiens
NTAAWYGN
NCRWTTAN		 SELEX
Yin et al.(2017)
BARHL1_eDBD_HT-SELEX_1 		0.613 0.579
BARHL1
M05092_2.00 		Homo sapiens
NTAADBGN
NCVHTTAN		 SELEX
Yin et al.(2017)
BARHL1_eDBD_HT-SELEX_2 		0.613 0.579
BARHL1
M05093_2.00 		Homo sapiens
NTAADKGN
NCMHTTAN		 SELEX
Yin et al.(2017)
BARHL1_eDBD_Methyl-HT-SELEX 		0.613 0.579
CG18599
M06539_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Mathelier et al.(2014)
MA0177.1 		0.613 0.491
CG18599
M06354_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Zhu et al.(2011)
CG18599_Cell_FBgn0038592 		0.613 0.491
CG18599
M06355_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
CG18599_SOLEXA_FBgn0038592 		0.613 0.491
NEMVEDRAFT_v1g8907
M02154_2.00 		Nematostella vectensis
NTAATDRNNN
NNNYHATTAN		 PBM
Weirauch et al.(2014)
pTH6483 		0.612 0.544
Lbx2
M00465_2.00 		Mus musculus
NHAABNRN
NYNVTTDN		 PBM
Berger et al.(2008)
Lbx2_3869 		0.611 0.544
LBX2
M03224_2.00 		Homo sapiens
TAAYYRSNTYNAB
VTNRANSYRRTTA		 SELEX
Jolma et al.(2013)
LBX2_1 		0.611 0.526
LBX2
M03225_2.00 		Homo sapiens
NNTAATTRVN
NBYAATTANN		 SELEX
Jolma et al.(2013)
LBX2_2 		0.611 0.526
LBX2
M05321_2.00 		Homo sapiens
HTAAYRAG
CTYRTTAD		 SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_1 		0.611 0.526
LBX2
M05322_2.00 		Homo sapiens
NTAATTAAYKRG
CYMRTTAATTAN		 SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_2 		0.611 0.526
LBX2
M05323_2.00 		Homo sapiens
VYTAATTRGB
VCYAATTARB		 SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_3 		0.611 0.526
LBX2
M05324_2.00 		Homo sapiens
HTAAYGAG
CTCRTTAD		 SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_1 		0.611 0.526
LBX2
M05325_2.00 		Homo sapiens
ATAATTAATKAG
CTMATTAATTAT		 SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_2 		0.611 0.526
LBX2
M05326_2.00 		Homo sapiens
NNTAATKRDN
NHYMATTANN		 SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_3 		0.611 0.526
Gsx2
M00469_2.00 		Mus musculus
NTAATDDNN
NNHHATTAN		 PBM
Berger et al.(2008)
Gsh2_3990 		0.610 0.491
GSX1
M03205_2.00 		Homo sapiens
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
GSX1_1 		0.610 0.491
GSX2
M03227_2.00 		Homo sapiens
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
GSX2_1 		0.610 0.491
GSX1
M05271_2.00 		Homo sapiens
NYMATNRN
NYNATKRN		 SELEX
Yin et al.(2017)
GSX1_eDBD_HT-SELEX 		0.610 0.491
GSX2
M05329_2.00 		Homo sapiens
HTAATKRS
SYMATTAD		 SELEX
Yin et al.(2017)
GSX2_eDBD_HT-SELEX 		0.610 0.491
ind
M06527_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0228.1 		0.610 0.491
ind
M06329_2.00 		Drosophila melanogaster
YVYTAATKA
TMATTARBR		 B1H
Zhu et al.(2011)
Ind_Cell_FBgn0025776 		0.610 0.491
GSX1
M05272_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
GSX1_eDBD_Methyl-HT-SELEX 		0.610 0.491
GSX2
M05330_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
GSX2_eDBD_Methyl-HT-SELEX 		0.610 0.491
zen
M03805_2.00 		Drosophila melanogaster
BTAATKRB
VYMATTAV		 SELEX
Nitta et al.(2015)
zen_1 		0.610 0.474
zen
M06500_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0256.1 		0.610 0.474
zen
M06276_2.00 		Drosophila melanogaster
NBYTAATKA
TMATTARBN		 B1H
Zhu et al.(2011)
Zen_Cell_FBgn0004053 		0.610 0.474
zen
M06277_2.00 		Drosophila melanogaster
AANWTWAWTG
CAWTWAWNTT		 B1H
Zhu et al.(2011)
zen_FlyReg_FBgn0004053 		0.610 0.474
zen
M06278_2.00 		Drosophila melanogaster
NYTAATKA
TMATTARN		 B1H
Zhu et al.(2011)
Zen_SOLEXA_FBgn0004053 		0.610 0.474
Q70HR3_PLEPI
M02210_2.00 		Pleurobrachia pileus
NVVTACTWRD
HYWAGTABBN		 PBM
Weirauch et al.(2014)
pTH6529 		0.610 0.509
En2
M00484_2.00 		Mus musculus
NNYHATHN
NDATDRNN		 PBM
Berger et al.(2008)
En2_0952 		0.609 0.456
EN2
M03189_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
EN2_1 		0.609 0.456
EN2
M03190_2.00 		Homo sapiens
VBTAATTRNN
NNYAATTAVB		 SELEX
Jolma et al.(2013)
EN2_2 		0.609 0.456
En2
M03276_2.00 		Mus musculus
VBTAATTASN
NSTAATTAVB		 SELEX
Jolma et al.(2013)
En2_1 		0.609 0.456
EN2
M05237_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
EN2_eDBD_HT-SELEX 		0.609 0.456
EN2
M05238_2.00 		Homo sapiens
VHTDAYGHB
VDCRTHADB		 SELEX
Yin et al.(2017)
EN2_eDBD_Methyl-HT-SELEX_1 		0.609 0.456
EN2
M05239_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
EN2_eDBD_Methyl-HT-SELEX_2 		0.609 0.456
En1
M00519_2.00 		Mus musculus
HNWTNNN
NNNAWND		 PBM
Berger et al.(2008)
En1_3123 		0.609 0.439
EN1
M03180_2.00 		Homo sapiens
NNTAATTRVB
VBYAATTANN		 SELEX
Jolma et al.(2013)
EN1_1 		0.609 0.439
EN1
M03181_2.00 		Homo sapiens
TAATTRSNYAATTA
TAATTRNSYAATTA		 SELEX
Jolma et al.(2013)
EN1_2 		0.609 0.439
EN1
M03182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
EN1_3 		0.609 0.439
EN1
M03183_2.00 		Homo sapiens
TDAKKRSNYMATTA
TAATKRNSYMMTHA		 SELEX
Jolma et al.(2013)
EN1_4 		0.609 0.439
EN1
M05218_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
EN1_eDBD_HT-SELEX 		0.609 0.439
EN1
M05871_2.00 		Homo sapiens
VNYAATTA
TAATTRNB		 SMiLE-seq
Isakova et al.(2017)
EN1 		0.609 0.439
EN1
M10714_2.00 		Homo sapiens
RTDDTBB
VVAHHAY		 Transfac
Matys et al.(2006)
V$EN1_01 		0.609 0.439
EN1
M05219_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
EN1_eDBD_Methyl-HT-SELEX_1 		0.609 0.439
EN1
M05220_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
EN1_eDBD_Methyl-HT-SELEX_2 		0.609 0.439
zen2
M02118_2.00 		Drosophila melanogaster
NNTAATKRNN
NNYMATTANN		 PBM
Weirauch et al.(2014)
pTH5479 		0.609 0.491
zen2
M03806_2.00 		Drosophila melanogaster
BTAATKAS
STMATTAV		 SELEX
Nitta et al.(2015)
zen2_1 		0.609 0.491
zen2
M03807_2.00 		Drosophila melanogaster
BTAATKWNNVRNNNNYBNNWMATTAV
BTAATKWNNVRNNNNYBNNWMATTAV		 SELEX
Nitta et al.(2015)
zen2_2 		0.609 0.491
zen2
M06501_2.00 		Drosophila melanogaster
BTAATKA
TMATTAV		 B1H
Mathelier et al.(2014)
MA0257.1 		0.609 0.491
zen2
M06279_2.00 		Drosophila melanogaster
HNBTAATKA
TMATTAVND		 B1H
Zhu et al.(2011)
Zen2_Cell_FBgn0004054 		0.609 0.491
zen2
M06280_2.00 		Drosophila melanogaster
NNNTAATKRN
NYMATTANNN		 B1H
Zhu et al.(2011)
zen2_SOLEXA_2_FBgn0004054 		0.609 0.491
zen2
M06281_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
Zen2_SOLEXA_FBgn0004054 		0.609 0.491
en
M03793_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
en_1 		0.608 0.456
en
M06485_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0220.1 		0.608 0.456
inv
M06491_2.00 		Drosophila melanogaster
DYTAATTR
YAATTARH		 B1H
Mathelier et al.(2014)
MA0229.1 		0.608 0.456
en
M06236_2.00 		Drosophila melanogaster
NYTAATTR
YAATTARN		 B1H
Zhu et al.(2011)
En_Cell_FBgn0000577 		0.608 0.456
en
M06237_2.00 		Drosophila melanogaster
DBTAATKR
YMATTAVH		 B1H
Zhu et al.(2011)
en_FlyReg_FBgn0000577 		0.608 0.456
en
M06238_2.00 		Drosophila melanogaster
NNNTAATTRN
NYAATTANNN		 B1H
Zhu et al.(2011)
en_SOLEXA_2_FBgn0000577 		0.608 0.456
en
M06239_2.00 		Drosophila melanogaster
NTAATTR
YAATTAN		 B1H
Zhu et al.(2011)
En_SOLEXA_FBgn0000577 		0.608 0.456
inv
M06255_2.00 		Drosophila melanogaster
DYTAATTR
YAATTARH		 B1H
Zhu et al.(2011)
Inv_Cell_FBgn0001269 		0.608 0.456
inv
M06256_2.00 		Drosophila melanogaster
NHTAATTRV
BYAATTADN		 B1H
Zhu et al.(2011)
inv_SOLEXA_2_FBgn0001269 		0.608 0.456
inv
M06257_2.00 		Drosophila melanogaster
NHTAATTRV
BYAATTADN		 B1H
Zhu et al.(2011)
inv_SOLEXA_5_FBgn0001269 		0.608 0.456
en
M09677_2.00 		Drosophila melanogaster
HTAATTRN
NYAATTAD		 Misc
Kulakovskiy et al.(2009)
en 		0.608 0.456
en
M10785_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$EN_Q6 		0.608 0.456
Dll
M02112_2.00 		Drosophila melanogaster
NVTAATTANN
NNTAATTABN		 PBM
Weirauch et al.(2014)
pTH5506 		0.607 0.579
Dll
M03777_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Dll_1 		0.607 0.579
Dll
M03778_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Dll_2 		0.607 0.579
Dll
M06479_2.00 		Drosophila melanogaster
TAATTDB
VHAATTA		 B1H
Mathelier et al.(2014)
MA0187.1 		0.607 0.579
Dll
M06217_2.00 		Drosophila melanogaster
TAATTDB
VHAATTA		 B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157 		0.607 0.579
Dll
M06218_2.00 		Drosophila melanogaster
TAATKR
YMATTA		 B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157 		0.607 0.579
Dlx2
M00423_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Dlx2_2273 		0.607 0.561
DLX2
M03118_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX2_1 		0.607 0.561
Dlx2
M03254_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Dlx2_1 		0.607 0.561
DLX2
M05026_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX 		0.607 0.561
DLX2
M05028_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX 		0.607 0.561
DLX2
M10674_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX2_Q6 		0.607 0.561
DLX2
M05027_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX 		0.607 0.561
DLX2
M05029_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX 		0.607 0.561
Q24780_9CNID
M02205_2.00 		Eleutheria dichotoma
NNYTAATTAMN
NKTAATTARNN		 PBM
Weirauch et al.(2014)
pTH6308 		0.605 0.509
ro
M06495_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0241.1 		0.605 0.544
ro
M06264_2.00 		Drosophila melanogaster
NYTAATTA
TAATTARN		 B1H
Zhu et al.(2011)
Ro_Cell_FBgn0003267 		0.605 0.544
ro
M06265_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Ro_SOLEXA_FBgn0003267 		0.605 0.544
VAX2
M00284_2.00 		Homo sapiens
NNTAATND
HNATTANN		 PBM
Barrera et al.(2016)
VAX2_REF 		0.605 0.509
Vax1
M00398_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Vax1_3499 		0.605 0.509
Vax2
M00464_2.00 		Mus musculus
NTAATDDNN
NNHHATTAN		 PBM
Berger et al.(2008)
Vax2_3500 		0.605 0.509
VAX2
M03119_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX2_1 		0.605 0.509
VAX2
M05030_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
VAX2_FL_HT-SELEX 		0.605 0.509
Vax1
M10764_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VAX1_04 		0.605 0.509
VAX2
M05031_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
VAX2_FL_Methyl-HT-SELEX 		0.605 0.509
ventx1.1.L
M02234_2.00 		Xenopus laevis
NNNNVBNNNN
NNNNVBNNNN		 PBM
Weirauch et al.(2014)
pTH6162 		0.604 0.544
ventx1.2.S
M10805_2.00 		Xenopus laevis
RSRMAAATWBBVS
SBBBWATTTKYSY		 Transfac
Matys et al.(2006)
V$XVENT1_01 		0.604 0.526
ceh-5
M02179_2.00 		Caenorhabditis elegans
NNTAATDDN
NHHATTANN		 PBM
Weirauch et al.(2014)
pTH6562 		0.602 0.544
NANOG
M05015_2.00 		Homo sapiens
NYRABBVB
VBVVTYRN		 SELEX
Yin et al.(2017)
NANOG_eDBD_HT-SELEX 		0.601 0.474
NANOG
M09139_2.00 		Homo sapiens
NTYWRCATNWSAAWRVN
NBYWTTSWNATGYWRAN		 Misc
Kulakovskiy et al.(2013)
NANOG_HUMAN.H11MO.0.A 		0.601 0.474
NANOG
M10664_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NANOG_01 		0.601 0.474
NANOG
M10665_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NANOG_02 		0.601 0.474
NANOG
M10666_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NANOG_05 		0.601 0.474
NANOG
M10667_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NANOG_07 		0.601 0.474
NANOG
M10668_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NANOG_Q3 		0.601 0.474
NANOG
M10669_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NANOG_Q6 		0.601 0.474
NANOG
M05016_2.00 		Homo sapiens
NHAAYGH
DCRTTDN		 SELEX
Yin et al.(2017)
NANOG_eDBD_Methyl-HT-SELEX_1 		0.601 0.474
NANOG
M05017_2.00 		Homo sapiens
NYRABKRN
NYMVTYRN		 SELEX
Yin et al.(2017)
NANOG_eDBD_Methyl-HT-SELEX_2 		0.601 0.474
Barhl2
M00460_2.00 		Mus musculus
NTAAWNRNN
NNYNWTTAN		 PBM
Berger et al.(2008)
Barhl2_3868 		0.601 0.579
BARHL2
M03157_2.00 		Homo sapiens
NNTAAWYGNN
NNCRWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_1 		0.601 0.579
BARHL2
M03158_2.00 		Homo sapiens
NNTAAWBGNN
NNCVWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_2 		0.601 0.579
BARHL2
M03159_2.00 		Homo sapiens
TAAWYGNNNNTAAWYR
YRWTTANNNNCRWTTA		 SELEX
Jolma et al.(2013)
BARHL2_3 		0.601 0.579
BARHL2
M03160_2.00 		Homo sapiens
NNTAAWYGNH
DNCRWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_4 		0.601 0.579
BARHL2
M03161_2.00 		Homo sapiens
NNTAAWYGNN
NNCRWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_5 		0.601 0.579
BARHL2
M03162_2.00 		Homo sapiens
TAAWYGNYNHTAAWYG
CRWTTADNRNCRWTTA		 SELEX
Jolma et al.(2013)
BARHL2_6 		0.601 0.579
BARHL2
M05164_2.00 		Homo sapiens
HTAAAYGNY
RNCRTTTAD		 SELEX
Yin et al.(2017)
BARHL2_eDBD_HT-SELEX_1 		0.601 0.579
BARHL2
M05165_2.00 		Homo sapiens
NTAAWTGNB
VNCAWTTAN		 SELEX
Yin et al.(2017)
BARHL2_eDBD_HT-SELEX_2 		0.601 0.579
BARHL2
M05167_2.00 		Homo sapiens
NTAAWYGN
NCRWTTAN		 SELEX
Yin et al.(2017)
BARHL2_FL_HT-SELEX_1 		0.601 0.579
BARHL2
M05168_2.00 		Homo sapiens
NTAAWYGN
NCRWTTAN		 SELEX
Yin et al.(2017)
BARHL2_FL_HT-SELEX_2 		0.601 0.579
BARHL2
M05166_2.00 		Homo sapiens
NTAAWTGNB
VNCAWTTAN		 SELEX
Yin et al.(2017)
BARHL2_eDBD_Methyl-HT-SELEX 		0.601 0.579
BARHL2
M05169_2.00 		Homo sapiens
NTAAWTGN
NCAWTTAN		 SELEX
Yin et al.(2017)
BARHL2_FL_Methyl-HT-SELEX 		0.601 0.579
ENSTNIG00000006040
M02106_2.00 		Tetraodon nigroviridis
NNNBTAAWHRBNN
NNVYDWTTAVNNN		 PBM
Weirauch et al.(2014)
pTH6503 		0.601 0.561
B-H1
M03829_2.00 		Drosophila melanogaster
VNTAAWYGNN
NNCRWTTANB		 SELEX
Nitta et al.(2015)
B-H1_1 		0.601 0.509
B-H1
M03830_2.00 		Drosophila melanogaster
SNTAADBGN
NCVHTTANS		 SELEX
Nitta et al.(2015)
B-H1_2 		0.601 0.509
B-H1
M06512_2.00 		Drosophila melanogaster
HTAAWYG
CRWTTAD		 B1H
Mathelier et al.(2014)
MA0168.1 		0.601 0.509
B-H2
M03810_2.00 		Drosophila melanogaster
VNTAAAYGNH
DNCRTTTANB		 SELEX
Nitta et al.(2015)
B-H2_1 		0.601 0.491
B-H2
M03811_2.00 		Drosophila melanogaster
SNTAADBGN
NCVHTTANS		 SELEX
Nitta et al.(2015)
B-H2_2 		0.601 0.491
B-H2
M06503_2.00 		Drosophila melanogaster
WTAATTG
CAATTAW		 B1H
Mathelier et al.(2014)
MA0169.1 		0.601 0.491
Q9BJW6_9CNID
M02215_2.00 		Sarsia sp. Long Island Sound
NBTAATTAVN
NBTAATTAVN		 PBM
Weirauch et al.(2014)
pTH6287 		0.600 0.474
VAX2
M00283_2.00 		Homo sapiens
NNTAAWNDNN
NNHNWTTANN		 PBM
Barrera et al.(2016)
VAX2_L139M 		0.599 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000004607 Homeodomain 166 222

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

4481 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI27939 Acyrthosiphon pisum ACYPI27939 I
ACYPI48371 Acyrthosiphon pisum ACYPI48371 I
AAEL005974 Aedes aegypti AAEL005974 I
AAEL012150 Aedes aegypti AAEL012150 I
ENSAMEG00000010272 Ailuropoda melanoleuca ENSAMEG00000010272 I
ENSAMEG00000015811 Ailuropoda melanoleuca ENSAMEG00000015811 I
Alligator_sinensis_CCG013033.1 Alligator sinensis Alligator_sinensis_CCG013033.1 I
ENSAPLG00000011161 Anas platyrhynchos ENSAPLG00000011161 I
ENSAPLG00000013752 Anas platyrhynchos ENSAPLG00000013752 I
ENSACAG00000002581 Anolis carolinensis ENSACAG00000002581 I
ENSACAG00000015317 Anolis carolinensis ENSACAG00000015317 I
DBX1 Anolis carolinensis ENSACAG00000015625 I
AATE018929 Anopheles atroparvus AATE018929 I
ACOM031223 Anopheles coluzzii ACOM031223 I
ADIR004110 Anopheles dirus ADIR004110 I
AFUN003184 Anopheles funestus AFUN003184 I
AGAP005727 Anopheles gambiae AGAP005727 I
AMEM006151 Anopheles merus AMEM006151 I
ASIS013776 Anopheles sinensis ASIS013776 I
GB42897 Apis mellifera GB42897 I
GB49362 Apis mellifera GB49362 I
Afo_R000355 Aptenodytes forsteri Afo_R000355 I
Afo_R010414 Aptenodytes forsteri Afo_R010414 I
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I
ENSAMXG00000012905 Astyanax mexicanus ENSAMXG00000012905 I
ENSAMXG00000013419 Astyanax mexicanus ENSAMXG00000013419 I
ENSAMXG00000014548 Astyanax mexicanus ENSAMXG00000014548 I
ENSAMXG00000016737 Astyanax mexicanus ENSAMXG00000016737 I
ACEP14997 Atta cephalotes ACEP14997 I
BGLB013811 Biomphalaria glabrata BGLB013811 I
BGIBMGA008482 Bombyx mori BGIBMGA008482 I
ENSBTAP00000003543-D1 Bos grunniens ENSBTAP00000003543-D1 I
ENSBTAP00000019352-D1 Bos grunniens ENSBTAP00000019352-D1 I
ENSP00000331470-D1 Bos grunniens ENSP00000331470-D1 I
DBX1 Bos taurus ENSBTAG00000002733 I
DBX2 Bos taurus ENSBTAG00000006635 I
HLX Bos taurus ENSBTAG00000014560 I
fgenesh2_pg.scaffold_222000058 Branchiostoma floridae fgenesh2_pg.scaffold_222000058 I
gw.473.22.1 Branchiostoma floridae gw.473.22.1 I
gw.83.80.1 Branchiostoma floridae gw.83.80.1 I
Brh_R002799 Buceros rhinoceros Brh_R002799 I
Brh_R003637 Buceros rhinoceros Brh_R003637 I
HLX Callithrix jacchus ENSCJAG00000006110 I
DBX1 Callithrix jacchus ENSCJAG00000006734 I
DBX2 Callithrix jacchus ENSCJAG00000013213 I
Aan_R006646 Calypte anna Aan_R006646 I
Aan_R009530 Calypte anna Aan_R009530 I
Aan_R012348 Calypte anna Aan_R012348 I
Cflo_10458--XP_001121170.1_APIME Camponotus floridanus Cflo_10458--XP_001121170.1_APIME I
ENSCAFG00000009372 Canis familiaris ENSCAFG00000009372 I
HLX Canis familiaris ENSCAFG00000011340 I
CapteG173964 Capitella teleta CapteG173964 I
CapteG220261 Capitella teleta CapteG220261 I
ENSCPOG00000011069 Cavia porcellus ENSCPOG00000011069 I
DBX1 Cavia porcellus ENSCPOG00000019811 I
HLX Cavia porcellus ENSCPOG00000024028 I
Cmyd_10016425 Chelonia mydas Cmyd_10016425 I
ENSCSAG00000005115 Chlorocebus sabaeus ENSCSAG00000005115 I
ENSCSAG00000015879 Chlorocebus sabaeus ENSCSAG00000015879 I
CLEC011407 Cimex lectularius CLEC011407 I
ENSCING00000012835 Ciona intestinalis ENSCING00000012835 I
hlx Ciona intestinalis ENSCING00000019191 I
CGI_10002480 Crassostrea gigas CGI_10002480 I
CGI_10013972 Crassostrea gigas CGI_10013972 I
KGM_12383 Danaus plexippus KGM_12383 I
KGM_21891 Danaus plexippus KGM_21891 I
dbx1b Danio rerio ENSDARG00000001859 I
hlx1 Danio rerio ENSDARG00000009134 I
nanog Danio rerio ENSDARG00000075113 I
dbx1a Danio rerio ENSDARG00000086393 I
CABZ01093502.1 Danio rerio ENSDARG00000105053 I
DAPPUDRAFT_37379 Daphnia pulex DAPPUDRAFT_37379 I
DAPPUDRAFT_53297 Daphnia pulex DAPPUDRAFT_53297 I
HLX Dasypus novemcinctus ENSDNOG00000007014 I
DBX1 Dasypus novemcinctus ENSDNOG00000015450 I
DBX2 Dasypus novemcinctus ENSDNOG00000046429 I
YQE_05944 Dendroctonus ponderosae YQE_05944 I
Hlx Dipodomys ordii ENSDORG00000001941 I
GF14286 Drosophila ananassae FBgn0091313 I
GF20095 Drosophila ananassae FBgn0097102 I
GG10151 Drosophila erecta FBgn0102462 I
GG14836 Drosophila erecta FBgn0107091 I
GH10711 Drosophila grimshawi FBgn0118192 I
GH16166 Drosophila grimshawi FBgn0123637 I
H2.0 Drosophila melanogaster FBgn0001170 D
Dbx Drosophila melanogaster FBgn0261723 D
GI11292 Drosophila mojavensis FBgn0134053 I
GI13319 Drosophila mojavensis FBgn0136076 I
GL19089 Drosophila persimilis FBgn0156689 I
GL25317 Drosophila persimilis FBgn0162901 I
GA11095 Drosophila pseudoobscura FBgn0071150 I
GA11582 Drosophila pseudoobscura FBgn0071633 I
GM14459 Drosophila sechellia FBgn0169382 I
GM17974 Drosophila sechellia FBgn0172881 I
GD22610 Drosophila simulans FBgn0194011 I
GJ12089 Drosophila virilis FBgn0199341 I
GJ12503 Drosophila virilis FBgn0199743 I
GK12528 Drosophila willistoni FBgn0214538 I
GK15402 Drosophila willistoni FBgn0217407 I
GE18959 Drosophila yakuba FBgn0236329 I
GE21201 Drosophila yakuba FBgn0238476 I
HLX Equus caballus ENSECAG00000003025 I
DBX2 Equus caballus ENSECAG00000012695 I
DBX1 Equus caballus ENSECAG00000019994 I
HLX Erinaceus europaeus ENSEEUG00000004973 I
ENSEEUG00000006518 Erinaceus europaeus ENSEEUG00000006518 I
ENSEEUG00000014300 Erinaceus europaeus ENSEEUG00000014300 N
HLX Felis catus ENSFCAG00000002974 I
ENSFALG00000001676 Ficedula albicollis ENSFALG00000001676 I
ENSFALG00000010170 Ficedula albicollis ENSFALG00000010170 I
ENSGMOG00000001751 Gadus morhua ENSGMOG00000001751 I
ENSGMOG00000003244 Gadus morhua ENSGMOG00000003244 I
ENSGMOG00000009056 Gadus morhua ENSGMOG00000009056 I
DBX1 Gallus gallus ENSGALG00000003965 I
DBX2 Gallus gallus ENSGALG00000009604 I
ENSGACG00000000220 Gasterosteus aculeatus ENSGACG00000000220 I
ENSGACG00000004000 Gasterosteus aculeatus ENSGACG00000004000 I
hlx1 Gasterosteus aculeatus ENSGACG00000010057 I
DBX1 Gasterosteus aculeatus ENSGACG00000014112 I
Gfo_R004056 Geospiza fortis Gfo_R004056 I
HLX Gorilla gorilla ENSGGOG00000002735 I
DBX2 Gorilla gorilla ENSGGOG00000004664 I
HHAL002166-PA Halyomorpha halys HHAL002166-PA I
Hsal_11910--XP_001121170.1_APIME Harpegnathos saltator Hsal_11910--XP_001121170.1_APIME I
HelroG148518 Helobdella robusta HelroG148518 I
HelroG74087 Helobdella robusta HelroG74087 I
DBX1 Homo sapiens ENSG00000109851 I
HLX Homo sapiens ENSG00000136630 I
DBX2 Homo sapiens ENSG00000185610 I
ENSSTOG00000000232 Ictidomys tridecemlineatus ENSSTOG00000000232 I
ENSSTOG00000006326 Ictidomys tridecemlineatus ENSSTOG00000006326 I
ENSSTOG00000015557 Ictidomys tridecemlineatus ENSSTOG00000015557 I
ISCW020093 Ixodes scapularis ISCW020093 I
ENSLACG00000003968 Latimeria chalumnae ENSLACG00000003968 I
ENSLACG00000008955 Latimeria chalumnae ENSLACG00000008955 I
ENSLACG00000011299 Latimeria chalumnae ENSLACG00000011299 I
ENSLOCG00000004886 Lepisosteus oculatus ENSLOCG00000004886 I
ENSLOCG00000016392 Lepisosteus oculatus ENSLOCG00000016392 I
ENSLOCG00000016431 Lepisosteus oculatus ENSLOCG00000016431 I
LDEC019190 Leptinotarsa decemlineata LDEC019190 I
LotgiG64310 Lottia gigantea LotgiG64310 I
LotgiG80492 Lottia gigantea LotgiG80492 I
HLX Loxodonta africana ENSLAFG00000001289 I
DBX2 Loxodonta africana ENSLAFG00000005006 I
DBX1 Loxodonta africana ENSLAFG00000007378 I
LCUP007749 Lucilia cuprina LCUP007749 I
LLOJ006552 Lutzomyia longipalpis LLOJ006552 I
ENSP00000331470 Macaca fascicularis ENSP00000331470 I
ENSMMUG00000022290 Macaca mulatta ENSMMUG00000022290 I
ENSMEUG00000016510 Macropus eugenii ENSMEUG00000016510 I
ENSMGAG00000002299 Meleagris gallopavo ENSMGAG00000002299 I
ENSMGAG00000009614 Meleagris gallopavo ENSMGAG00000009614 I
ENSMICG00000005919 Microcebus murinus ENSMICG00000005919 I
ENSMICG00000007764 Microcebus murinus ENSMICG00000007764 I
HLX Monodelphis domestica ENSMODG00000004664 I
DBX1 Monodelphis domestica ENSMODG00000009081 I
DBX2 Monodelphis domestica ENSMODG00000018530 I
MDOA007091 Musca domestica MDOA007091 I
MDOA015219 Musca domestica MDOA015219 I
ENSMPUG00000000372 Mustela putorius furo ENSMPUG00000000372 I
ENSMPUG00000003954 Mustela putorius furo ENSMPUG00000003954 I
ENSMPUG00000013914 Mustela putorius furo ENSMPUG00000013914 I
Dbx1 Mus musculus ENSMUSG00000030507 D
Hlx Mus musculus ENSMUSG00000039377 D
Dbx2 Mus musculus ENSMUSG00000045608 D
Myotis_brandtii_DBX2_10029487 Myotis brandtii Myotis_brandtii_DBX2_10029487 I
ENSMLUG00000007038 Myotis lucifugus ENSMLUG00000007038 I
HLX Myotis lucifugus ENSMLUG00000015571 I
NV18099 Nasonia vitripennis NV18099 I
NEMVEDRAFT_v1g100892 Nematostella vectensis NEMVEDRAFT_v1g100892 I
NEMVEDRAFT_v1g80365 Nematostella vectensis NEMVEDRAFT_v1g80365 I
ENSNLEG00000013773 Nomascus leucogenys ENSNLEG00000013773 I
ENSNLEG00000017924 Nomascus leucogenys ENSNLEG00000017924 I
HLX Ochotona princeps ENSOPRG00000011504 I
Ocbimv22005553m.g Octopus bimaculoides Ocbimv22005553m.g I
Ogr19305 Ophisaurus gracilis Ogr19305 I
ENSONIG00000005980 Oreochromis niloticus ENSONIG00000005980 I
ENSONIG00000007144 Oreochromis niloticus ENSONIG00000007144 I
ENSONIG00000008764 Oreochromis niloticus ENSONIG00000008764 I
ENSONIG00000012709 Oreochromis niloticus ENSONIG00000012709 I
ENSOANG00000001435 Ornithorhynchus anatinus ENSOANG00000001435 I
HLX Oryctolagus cuniculus ENSOCUG00000006015 I
DBX1 Oryctolagus cuniculus ENSOCUG00000007615 I
ENSOCUG00000022068 Oryctolagus cuniculus ENSOCUG00000022068 I
dbx1b Oryzias latipes ENSORLG00000000807 I
ENSORLG00000002970 Oryzias latipes ENSORLG00000002970 I
hlx1 Oryzias latipes ENSORLG00000012055 I
DBX1 Oryzias latipes ENSORLG00000014512 I
DBX2 Otolemur garnettii ENSOGAG00000008999 I
HLX Otolemur garnettii ENSOGAG00000012065 I
DBX1 Otolemur garnettii ENSOGAG00000014591 I
ENSOARG00000008379 Ovis aries ENSOARG00000008379 I
ENSOARG00000013206 Ovis aries ENSOARG00000013206 I
ENSOARG00000019598 Ovis aries ENSOARG00000019598 I
HLX Pan troglodytes ENSPTRG00000002004 I
DBX2 Pan troglodytes ENSPTRG00000004849 I
ENSPANG00000005953 Papio anubis ENSPANG00000005953 I
ENSPANG00000010481 Papio anubis ENSPANG00000010481 I
PHUM365830 Pediculus humanus PHUM365830 I
PHUM604510 Pediculus humanus PHUM604510 I
ENSPSIG00000009557 Pelodiscus sinensis ENSPSIG00000009557 I
ENSPSIG00000012138 Pelodiscus sinensis ENSPSIG00000012138 I
ENSPSIG00000013519 Pelodiscus sinensis ENSPSIG00000013519 I
ENSPMAG00000000895 Petromyzon marinus ENSPMAG00000000895 I
ENSPMAG00000004878 Petromyzon marinus ENSPMAG00000004878 I
ENSPMAG00000009840 Petromyzon marinus ENSPMAG00000009840 I
ENSPFOG00000004028 Poecilia formosa ENSPFOG00000004028 I
ENSPFOG00000008292 Poecilia formosa ENSPFOG00000008292 I
ENSPFOG00000009708 Poecilia formosa ENSPFOG00000009708 I
ENSPFOG00000014727 Poecilia formosa ENSPFOG00000014727 I
ENSPFOG00000018919 Poecilia formosa ENSPFOG00000018919 I
Pvit_06412 Pogona vitticeps Pvit_06412 I
Pvit_11516 Pogona vitticeps Pvit_11516 I
Pvit_13000 Pogona vitticeps Pvit_13000 I
ENSPPYG00000000202 Pongo abelii ENSPPYG00000000202 I
ENSPPYG00000004431 Pongo abelii ENSPPYG00000004431 I
DBX2 Procavia capensis ENSPCAG00000006299 I
HLX Procavia capensis ENSPCAG00000012295 I
HLX Pteropus vampyrus ENSPVAG00000004552 I
Hlx Rattus norvegicus ENSRNOG00000002309 I
Dbx2 Rattus norvegicus ENSRNOG00000006885 I
Dbx1 Rattus norvegicus ENSRNOG00000014706 I
RPRC002486 Rhodnius prolixus RPRC002486 I
RPRC010617 Rhodnius prolixus RPRC010617 I
nRc.2.0.1.g17174 Romanomermis culicivorax nRc.2.0.1.g17174 I
Sakowv30040055m.g Saccoglossus kowalevskii Sakowv30040055m.g I
Sakowv30044972m.g Saccoglossus kowalevskii Sakowv30044972m.g I
ENSSHAG00000011774 Sarcophilus harrisii ENSSHAG00000011774 I
ENSSHAG00000012054 Sarcophilus harrisii ENSSHAG00000012054 I
ENSSHAG00000012659 Sarcophilus harrisii ENSSHAG00000012659 I
SMU15029512 Schmidtea mediterranea SMU15029512 I
SMU15032021 Schmidtea mediterranea SMU15032021 I
SINV11867 Solenopsis invicta SINV11867 I
ENSSARG00000007797 Sorex araneus ENSSARG00000007797 I
SMAR002236 Strigamia maritima SMAR002236 I
SPU_014802 Strongylocentrotus purpuratus SPU_014802 I
ENSSSCG00000010830 Sus scrofa ENSSSCG00000010830 I
DBX1 Sus scrofa ENSSSCG00000013350 I
DBX2 Taeniopygia guttata ENSTGUG00000006020 I
DBX1 Taeniopygia guttata ENSTGUG00000015791 I
hlx1 Takifugu rubripes ENSTRUG00000006753 I
dbx1b Takifugu rubripes ENSTRUG00000015886 I
ENSTRUG00000016696 Takifugu rubripes ENSTRUG00000016696 I
ENSTSYG00000001451 Tarsius syrichta ENSTSYG00000001451 I
tetur05g09190 Tetranychus urticae tetur05g09190 I
tetur22g00030 Tetranychus urticae tetur22g00030 I
DBX1 Tetraodon nigroviridis ENSTNIG00000004855 I
dbx1b Tetraodon nigroviridis ENSTNIG00000009613 I
ENSTNIG00000015979 Tetraodon nigroviridis ENSTNIG00000015979 I
hlx1 Tetraodon nigroviridis ENSTNIG00000016400 I
TC008368 Tribolium castaneum TC008368 I
TC015146 Tribolium castaneum TC015146 I
D917_00900 Trichinella nativa D917_00900 I
EFV57815 Trichinella spiralis EFV57815 I
TriadG18102 Trichoplax adhaerens TriadG18102 I
DBX2 Tupaia belangeri ENSTBEG00000012639 I
HLX Tupaia belangeri ENSTBEG00000014384 I
DBX2 Tursiops truncatus ENSTTRG00000003582 I
Tal_R005491 Tyto alba Tal_R005491 I
Tal_R010631 Tyto alba Tal_R010631 I
ENSVPAG00000000460 Vicugna pacos ENSVPAG00000000460 I
dbx2.L Xenopus laevis XB-GENE-6486281 I
dbx1.S Xenopus laevis XB-GENE-865351 I
dbx1 Xenopus tropicalis XB-GENE-480177 I
dbx2 Xenopus tropicalis XB-GENE-481734 I
hlx Xenopus tropicalis XB-GENE-483226 I
ENSXMAG00000004689 Xiphophorus maculatus ENSXMAG00000004689 I
ENSXMAG00000006476 Xiphophorus maculatus ENSXMAG00000006476 I
ENSXMAG00000010186 Xiphophorus maculatus ENSXMAG00000010186 I
ENSXMAG00000017389 Xiphophorus maculatus ENSXMAG00000017389 I
L798_13412 Zootermopsis nevadensis L798_13412 I