SPU_017837 (Strongylocentrotus purpuratus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 SPU_017837 T223731_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Dlx2
M00423_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Dlx2_2273 		0.695 0.491
Dll
M02112_2.00 		Drosophila melanogaster
NVTAATTANN
NNTAATTABN		 PBM
Weirauch et al.(2014)
pTH5506 		0.695 0.491
DLX2
M03118_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX2_1 		0.695 0.491
Dlx2
M03254_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Dlx2_1 		0.695 0.491
Dll
M03777_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Dll_1 		0.695 0.491
Dll
M03778_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Dll_2 		0.695 0.491
DLX2
M05026_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX 		0.695 0.491
DLX2
M05028_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX 		0.695 0.491
Dll
M06479_2.00 		Drosophila melanogaster
TAATTDB
VHAATTA		 B1H
Mathelier et al.(2014)
MA0187.1 		0.695 0.491
Dll
M06217_2.00 		Drosophila melanogaster
TAATTDB
VHAATTA		 B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157 		0.695 0.491
Dll
M06218_2.00 		Drosophila melanogaster
TAATKR
YMATTA		 B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157 		0.695 0.491
DLX2
M10674_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX2_Q6 		0.695 0.491
DLX2
M05027_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX 		0.695 0.491
DLX2
M05029_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX 		0.695 0.491
Dlx1
M00491_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Dlx1_1741 		0.689 0.491
DLX1
M03166_2.00 		Homo sapiens
NNTAATTDNN
NNHAATTANN		 SELEX
Jolma et al.(2013)
DLX1_1 		0.689 0.491
Dlx1
M03281_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Dlx1_1 		0.689 0.491
DLX1
M05176_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX1_eDBD_HT-SELEX 		0.689 0.491
DLX1
M05178_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX1_FL_HT-SELEX 		0.689 0.491
DLX1
M05177_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX1_eDBD_Methyl-HT-SELEX 		0.689 0.491
DLX1
M05179_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX1_FL_Methyl-HT-SELEX 		0.689 0.491
DLX6
M03078_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX6_1 		0.689 0.474
DLX6
M04905_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX6_eDBD_HT-SELEX 		0.689 0.474
DLX6
M04906_2.00 		Homo sapiens
NTAAYKAB
VTMRTTAN		 SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_1 		0.689 0.474
DLX6
M04907_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_2 		0.689 0.474
Dlx5
M00449_2.00 		Mus musculus
WRATNDN
NHNATYW		 PBM
Berger et al.(2008)
Dlx5_3419 		0.685 0.474
DLX5
M03095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX5_1 		0.685 0.474
DLX5
M04953_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_eDBD_HT-SELEX 		0.685 0.474
DLX5
M04956_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_FL_HT-SELEX 		0.685 0.474
Dlx5
M09195_2.00 		Mus musculus
WAATTRYWKBB
VVMWRYAATTW		 Misc
Kulakovskiy et al.(2013)
DLX5_MOUSE.H11MO.0.C 		0.685 0.474
DLX5
M10650_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX5_Q3 		0.685 0.474
DLX5
M04954_2.00 		Homo sapiens
NTAAYDAB
VTHRTTAN		 SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_1 		0.685 0.474
DLX5
M04955_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_2 		0.685 0.474
DLX5
M04957_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_1 		0.685 0.474
DLX5
M04958_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_2 		0.685 0.474
Dlx3
M00387_2.00 		Mus musculus
NTAATDRNN
NNYHATTAN		 PBM
Berger et al.(2008)
Dlx3_1030 		0.683 0.474
DLX3
M03081_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX3_1 		0.683 0.474
DLX3
M04922_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX3_eDBD_HT-SELEX 		0.683 0.474
DLX3
M04925_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX3_FL_HT-SELEX 		0.683 0.474
DLX3
M09129_2.00 		Homo sapiens
RVTAATTRVH
DBYAATTABY		 Misc
Kulakovskiy et al.(2013)
DLX3_HUMAN.H11MO.0.C 		0.683 0.474
Dlx3
M09172_2.00 		Mus musculus
RVTAATTRVH
DBYAATTABY		 Misc
Kulakovskiy et al.(2013)
DLX3_MOUSE.H11MO.0.C 		0.683 0.474
dlx3.L
M10803_2.00 		Xenopus laevis Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX3_02 		0.683 0.474
DLX3
M10638_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX3_Q3 		0.683 0.474
DLX3
M10639_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX3_Q6 		0.683 0.474
dlx3.L
M10804_2.00 		Xenopus laevis
YAWRTAAAYAWWRY
RYWWTRTTTAYWWR		 Transfac
Matys et al.(2006)
V$XFD1_01 		0.683 0.474
DLX3
M04923_2.00 		Homo sapiens
NTWAYKHB
VDMRTWAN		 SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_1 		0.683 0.474
DLX3
M04924_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_2 		0.683 0.474
DLX3
M04926_2.00 		Homo sapiens
NTWAYGHB
VDCRTWAN		 SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_1 		0.683 0.474
DLX3
M04927_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_2 		0.683 0.474
Dlx4
M00409_2.00 		Mus musculus
NWAATNDN
NHNATTWN		 PBM
Berger et al.(2008)
Dlx4_3488 		0.673 0.421
DLX4
M03112_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX4_1 		0.673 0.421
DLX4
M05002_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX4_eDBD_HT-SELEX 		0.673 0.421
DLX4
M05005_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX4_FL_HT-SELEX 		0.673 0.421
DLX4
M05003_2.00 		Homo sapiens
NTAAYRAB
VTYRTTAN		 SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_1 		0.673 0.421
DLX4
M05004_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_2 		0.673 0.421
DLX4
M05006_2.00 		Homo sapiens
NTAAYKAB
VTMRTTAN		 SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_1 		0.673 0.421
DLX4
M05007_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_2 		0.673 0.421
Hmx1
M00524_2.00 		Mus musculus
NHDAKYRNNN
NNNYRMTHDN		 PBM
Berger et al.(2008)
Hmx1_3423 		0.659 0.509
HMX1
M03243_2.00 		Homo sapiens
NNTTAAKTGNY
RNCAMTTAANN		 SELEX
Jolma et al.(2013)
HMX1_1 		0.659 0.509
HMX3
M03233_2.00 		Homo sapiens
NNNTAAKTGNN
NNCAMTTANNN		 SELEX
Jolma et al.(2013)
HMX3_1 		0.659 0.509
Hmx
M03882_2.00 		Drosophila melanogaster
NYRAKYGN
NCRMTYRN		 SELEX
Nitta et al.(2015)
Hmx_1 		0.659 0.509
HMX1
M05392_2.00 		Homo sapiens
BNYAAKTGN
NCAMTTRNV		 SELEX
Yin et al.(2017)
HMX1_eDBD_HT-SELEX 		0.659 0.509
Hmx
M06554_2.00 		Drosophila melanogaster
TTAATTG
CAATTAA		 B1H
Mathelier et al.(2014)
MA0192.1 		0.659 0.509
Hmx
M06386_2.00 		Drosophila melanogaster
TTAATTG
CAATTAA		 B1H
Zhu et al.(2011)
Hmx_Cell_FBgn0085448 		0.659 0.509
Hmx
M06387_2.00 		Drosophila melanogaster
TTAATTG
CAATTAA		 B1H
Zhu et al.(2011)
Hmx_SOLEXA_FBgn0085448 		0.659 0.509
HMX3
M10754_2.00 		Homo sapiens
CAAGTGCGTG
CACGCACTTG		 Transfac
Matys et al.(2006)
V$HMX1_01 		0.659 0.509
HMX1
M05393_2.00 		Homo sapiens
VNYAAKTGB
VCAMTTRNB		 SELEX
Yin et al.(2017)
HMX1_eDBD_Methyl-HT-SELEX 		0.659 0.509
Hmx3_CONSTRUCT
M00537_2.00 		PBM CONSTRUCTS
NHDADYRNN
NNYRHTHDN		 PBM
Berger et al.(2008)
Hmx3_3490 		0.646 0.491
Hmx2
M00507_2.00 		Mus musculus
NHRANYGNNN
NNNCRNTYDN		 PBM
Berger et al.(2008)
Hmx2_3424 		0.643 0.509
HMX2
M03234_2.00 		Homo sapiens
NNTTAAKTGNN
NNCAMTTAANN		 SELEX
Jolma et al.(2013)
HMX2_1 		0.643 0.509
HMX2
M05373_2.00 		Homo sapiens
GNHRAKYGS
SCRMTYDNC		 SELEX
Yin et al.(2017)
HMX2_eDBD_HT-SELEX 		0.643 0.509
HMX2
M05375_2.00 		Homo sapiens
NTTAAKTGNN
NNCAMTTAAN		 SELEX
Yin et al.(2017)
HMX2_FL_HT-SELEX 		0.643 0.509
HMX2
M05374_2.00 		Homo sapiens
NNTAAKTGN
NCAMTTANN		 SELEX
Yin et al.(2017)
HMX2_eDBD_Methyl-HT-SELEX 		0.643 0.509
HMX2
M05376_2.00 		Homo sapiens
NTTAAKTGNN
NNCAMTTAAN		 SELEX
Yin et al.(2017)
HMX2_FL_Methyl-HT-SELEX 		0.643 0.509
HOXC4
M00330_2.00 		Homo sapiens
YTAATTRB
VYAATTAR		 PBM
Barrera et al.(2016)
HOXC4_REF 		0.638 0.474
Hoxc4
M00530_2.00 		Mus musculus
NWAATNDNN
NNHNATTWN		 PBM
Berger et al.(2008)
Hoxc4_3491 		0.638 0.474
HOXC4
M05385_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX 		0.638 0.474
HOXC4
M00328_2.00 		Homo sapiens
YTAATTAB
VTAATTAR		 PBM
Barrera et al.(2016)
HOXC4_N178S 		0.638 0.474
HOXC4
M00329_2.00 		Homo sapiens
NTAATKRNN
NNYMATTAN		 PBM
Barrera et al.(2016)
HOXC4_R158L 		0.638 0.474
HOXC4
M05386_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1 		0.638 0.474
HOXC4
M05387_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2 		0.638 0.474
TLX2
M02087_2.00 		Homo sapiens
NYRDNNNNNN
NNNNNNHYRN		 PBM
Weirauch et al.(2014)
pTH6482 		0.637 0.491
Tlx2
M00526_2.00 		Mus musculus
WTTAAWTA
TAWTTAAW		 PBM
Berger et al.(2008)
Tlx2_3498 		0.637 0.491
TLX2
M05020_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
TLX2_eDBD_HT-SELEX 		0.637 0.491
C15
M06505_2.00 		Drosophila melanogaster
TTAAWKR
YMWTTAA		 B1H
Mathelier et al.(2014)
MA0170.1 		0.637 0.491
C15
M06289_2.00 		Drosophila melanogaster
BTTAAWKR
YMWTTAAV		 B1H
Zhu et al.(2011)
C15_Cell_FBgn0004863 		0.637 0.491
C15
M06290_2.00 		Drosophila melanogaster
NWTAAWKR
YMWTTAWN		 B1H
Zhu et al.(2011)
C15_SOLEXA_FBgn0004863 		0.637 0.491
TLX2
M10672_2.00 		Homo sapiens
BNGTAAKDNB
VNHMTTACNV		 Transfac
Matys et al.(2006)
V$NCX_01 		0.637 0.491
TLX2
M05021_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
TLX2_eDBD_Methyl-HT-SELEX 		0.637 0.491
lin-39
M08211_2.00 		Caenorhabditis elegans
GATTGATG
CATCAATC		 ChIP-seq
Contrino et al.(2012)
Mw154 		0.633 0.491
lin-39
M09582_2.00 		Caenorhabditis elegans
DTGATWRATK
MATYWATCAH		 Misc
Heinz et al.(2010)
cElegans.L3-LIN39_modEncode 		0.633 0.491
ceh-23
M00671_2.00 		Caenorhabditis elegans
HTAATTRNNN
NNNYAATTAD		 PBM
Narasimhan et al.(2015)
pTH9478 		0.628 0.386
Hoxa4
M00383_2.00 		Mus musculus
NTAATBDNN
NNHVATTAN		 PBM
Berger et al.(2008)
Hoxa4_3426 		0.626 0.474
HOXA4
M05381_2.00 		Homo sapiens
NTAATKRY
RYMATTAN		 SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX 		0.626 0.474
HOXA4
M10755_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA4_Q2 		0.626 0.474
HOXA4
M05382_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX 		0.626 0.474
Hoxb4
M00479_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Hoxb4_2627 		0.626 0.456
HOXB4
M05343_2.00 		Homo sapiens
YTAATKAY
RTMATTAR		 SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX 		0.626 0.456
HOXD4
M05273_2.00 		Homo sapiens
NTMATKRV
BYMATKAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX 		0.626 0.456
HOXD4
M05276_2.00 		Homo sapiens
NTAATKRB
VYMATTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX 		0.626 0.456
HOXB4
M09162_2.00 		Homo sapiens
YTAATKRS
SYMATTAR		 Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B 		0.626 0.456
Hoxb4
M09204_2.00 		Mus musculus
YTAATKRS
SYMATTAR		 Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A 		0.626 0.456
Hoxb4
M09576_2.00 		Mus musculus
TGATDRATKRSN
NSYMATYHATCA		 Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014 		0.626 0.456
HOXB4
M05344_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1 		0.626 0.456
HOXB4
M05345_2.00 		Homo sapiens
HTAAYKAB
VTMRTTAD		 SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2 		0.626 0.456
HOXD4
M05274_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1 		0.626 0.456
HOXD4
M05275_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2 		0.626 0.456
HOXD4
M05277_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1 		0.626 0.456
HOXD4
M05278_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2 		0.626 0.456
KLLA0_D10043g
M02140_2.00 		Kluyveromyces lactis
NNNNWWNNNN
NNNNWWNNNN		 PBM
Weirauch et al.(2014)
pTH6070 		0.609 0.386
MSX2
M00290_2.00 		Homo sapiens
WDATNDNN
NNHNATHW		 PBM
Barrera et al.(2016)
MSX2_REF 		0.606 0.526
Msx2
M00414_2.00 		Mus musculus
HRATKRNN
NNYMATYD		 PBM
Berger et al.(2008)
Msx2_3449 		0.606 0.526
Msx3
M00429_2.00 		Mus musculus
TAATKDNN
NNHMATTA		 PBM
Berger et al.(2008)
Msx3_3206 		0.606 0.526
Msx1
M00501_2.00 		Mus musculus
NHDATND
HNATHDN		 PBM
Berger et al.(2008)
Msx1_3031 		0.606 0.526
MSX1
M03184_2.00 		Homo sapiens
TAATTRBHHNHTAATTRN
NYAATTADNDDVYAATTA		 SELEX
Jolma et al.(2013)
MSX1_1 		0.606 0.526
MSX1
M03185_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_2 		0.606 0.526
MSX1
M03186_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_3 		0.606 0.526
MSX2
M03127_2.00 		Homo sapiens
TAATTRBHWKWTAATTGV
BCAATTAWMWDVYAATTA		 SELEX
Jolma et al.(2013)
MSX2_1 		0.606 0.526
MSX2
M03128_2.00 		Homo sapiens
NTAATTGB
VCAATTAN		 SELEX
Jolma et al.(2013)
MSX2_2 		0.606 0.526
Msx3
M03255_2.00 		Mus musculus
TAATTGSHHNNTAATTRN
NYAATTANNDDSCAATTA		 SELEX
Jolma et al.(2013)
Msx3_1 		0.606 0.526
Msx3
M03256_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Msx3_2 		0.606 0.526
MSX1
M05221_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX 		0.606 0.526
MSX1
M05224_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX 		0.606 0.526
MSX2
M05060_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX 		0.606 0.526
MSX1
M10715_2.00 		Homo sapiens
HNBTWWNTG
CANWWAVND		 Transfac
Matys et al.(2006)
V$MSX1_01 		0.606 0.526
MSX1
M10716_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5_01 		0.606 0.526
MSX1
M10717_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5 		0.606 0.526
MSX2
M10677_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q3 		0.606 0.526
MSX2
M10678_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q6 		0.606 0.526
MSX2
M00288_2.00 		Homo sapiens
NTAATNDN
NHNATTAN		 PBM
Barrera et al.(2016)
MSX2_P148H 		0.606 0.526
MSX1
M05222_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1 		0.606 0.526
MSX1
M05223_2.00 		Homo sapiens
NTWAYGMB
VKCRTWAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2 		0.606 0.526
MSX1
M05225_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1 		0.606 0.526
MSX1
M05226_2.00 		Homo sapiens
NTWAYGWB
VWCRTWAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2 		0.606 0.526
MSX2
M05061_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1 		0.606 0.526
MSX2
M05062_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2 		0.606 0.526
TLX3
M05233_2.00 		Homo sapiens
NAATKGNNNNNNNNNNNNNCAATTN
NAATTGNNNNNNNNNNNNNCMATTN		 SELEX
Yin et al.(2017)
TLX3_eDBD_HT-SELEX 		0.604 0.474
TLX3
M05235_2.00 		Homo sapiens
NAATTGNNNNNHNNNNCAATTN
NAATTGNNNNDNNNNNCAATTN		 SELEX
Yin et al.(2017)
TLX3_FL_HT-SELEX 		0.604 0.474
TLX3
M05234_2.00 		Homo sapiens
NAATTGNNNNNNNNNNDCAATTD
HAATTGHNNNNNNNNNNCAATTN		 SELEX
Yin et al.(2017)
TLX3_eDBD_Methyl-HT-SELEX 		0.604 0.474
TLX3
M05236_2.00 		Homo sapiens
HAATTRNNNNNNNNNYHATTV
BAATDRNNNNNNNNNYAATTD		 SELEX
Yin et al.(2017)
TLX3_FL_Methyl-HT-SELEX 		0.604 0.474
Dr
M00555_2.00 		Drosophila melanogaster
TAATTRNN
NNYAATTA		 PBM
Busser et al.(2012a)
Msh 		0.601 0.491
Dr
M06482_2.00 		Drosophila melanogaster
TAATTGS
SCAATTA		 B1H
Mathelier et al.(2014)
MA0188.1 		0.601 0.491
Dr
M06229_2.00 		Drosophila melanogaster
TAATTGSHB
VDSCAATTA		 B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492 		0.601 0.491
Dr
M06230_2.00 		Drosophila melanogaster
TAATTR
YAATTA		 B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492 		0.601 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_017837-tr Homeodomain 300 356

Links

Other Homeodomain family TFs
Other Strongylocentrotus purpuratus TFs

1657 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I
SVP Arabidopsis thaliana AT2G22540 D
AGL24 Arabidopsis thaliana AT4G24540 I
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I
Bo1g039080 Brassica oleracea Bo1g039080 I
Bo4g149800 Brassica oleracea Bo4g149800 I
Bo7g109590 Brassica oleracea Bo7g109590 I
Bo8g101000 Brassica oleracea Bo8g101000 I
Bra013812 Brassica rapa Bra013812 I
Bra019221 Brassica rapa Bra019221 I
Bra030228 Brassica rapa Bra030228 I
Bra038511 Brassica rapa Bra038511 I
PK10580.1 Cannabis sativa PK10580.1 I
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I
Carubv10005653m.g Capsella rubella Carubv10005653m.g I
Carubv10023941m.g Capsella rubella Carubv10023941m.g I
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I
Ca_01491 Cicer arietinum Ca_01491 I
Ca_12416 Cicer arietinum Ca_12416 I
Ca_21060 Cicer arietinum Ca_21060 I
Cla014322 Citrullus lanatus Cla014322 I
Cla022499 Citrullus lanatus Cla022499 I
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I
Cucsa.104010 Cucumis sativus Cucsa.104010 I
Cucsa.160640 Cucumis sativus Cucsa.160640 I
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I
GLYMA01G02880 Glycine max GLYMA01G02880 I
GLYMA02G04710 Glycine max GLYMA02G04710 I
GLYMA04G10015 Glycine max GLYMA04G10015 I
GLYMA06G10020 Glycine max GLYMA06G10020 I
GLYMA15G06302 Glycine max GLYMA15G06302 I
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I
LPERR03G05670 Leersia perrieri LPERR03G05670 I
Lus10025719.g Linum usitatissimum Lus10025719.g I
Lus10035942.g Linum usitatissimum Lus10035942.g I
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I
MDP0000132226 Malus domestica MDP0000132226 N
MDP0000143531 Malus domestica MDP0000143531 N
MDP0000209705 Malus domestica MDP0000209705 I
MDP0000233948 Malus domestica MDP0000233948 I
MDP0000255146 Malus domestica MDP0000255146 I
MDP0000259294 Malus domestica MDP0000259294 I
MDP0000277582 Malus domestica MDP0000277582 N
MDP0000311107 Malus domestica MDP0000311107 N
MDP0000322567 Malus domestica MDP0000322567 I
MDP0000378412 Malus domestica MDP0000378412 I
MDP0000527190 Malus domestica MDP0000527190 I
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I
MTR_5g032150 Medicago truncatula MTR_5g032150 I
MTR_5g032520 Medicago truncatula MTR_5g032520 I
MTR_5g066180 Medicago truncatula MTR_5g066180 I
mgf015964m Mimulus guttatus mgf015964m I
mgf018870m Mimulus guttatus mgf018870m I
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I
OBART03G06320 Oryza barthii OBART03G06320 I
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I
BGIOSGA011317 Oryza indica BGIOSGA011317 I
OMERI03G06190 Oryza meridionalis OMERI03G06190 I
ONIVA02G06550 Oryza nivara ONIVA02G06550 I
OPUNC03G06100 Oryza punctata OPUNC03G06100 I
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I
OS03G0186600 Oryza sativa OS03G0186600 I
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I
Pm002166 Prunus mume Pm002166 I
Pm004415 Prunus mume Pm004415 I
Pm004416 Prunus mume Pm004416 I
Pm004417 Prunus mume Pm004417 I
Pm004418 Prunus mume Pm004418 I
Pm004419 Prunus mume Pm004419 I
Pm004420 Prunus mume Pm004420 I
Pm022002 Prunus mume Pm022002 I
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I
29838.m001690 Ricinus communis 29838.m001690 I
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I
Si037358m.g Setaria italica Si037358m.g I
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I
Sb01g044810 Sorghum bicolor Sb01g044810 I
TCM_000992 Theobroma cacao TCM_000992 I
TCM_007378 Theobroma cacao TCM_007378 I
TCM_034501 Theobroma cacao TCM_034501 I
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I
SVP Vitis vinifera VIT_00s0313g00070 I
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I
AGL24 Vitis vinifera VIT_18s0001g07460 I
GRMZM2G059102 Zea mays GRMZM2G059102 I