gene29752-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene29752-v1.0-hybrid T228646_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.855 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna29752.1-v1.0-hybrid Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.000
Bo6g005800 Brassica oleracea Bo6g005800 N 0.000
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.000
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.000
CMQ_7998 Grosmannia clavigera CMQ_7998 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
Kwal_9519 Kluyveromyces waltii Kwal_9519 N 0.000
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.000
KUCA_T00004799001 Kuraishia capsulata KUCA_T00004799001 N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N 0.000
MDP0000699531 Malus domestica MDP0000699531 N 0.000
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.000
MAC_03708 Metarhizium acridum MAC_03708 N 0.000
MAM_02299 Metarhizium album MAM_02299 N 0.000
MAJ_01270 Metarhizium majus MAJ_01270 N 0.000
X797_001779 Metarhizium robertsii X797_001779 N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
F503_05434 Ophiostoma piceae uamh F503_05434 N 0.000
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
SCHCODRAFT_110960 Schizophyllum commune SCHCODRAFT_110960 N 0.000
PGSC0003DMG400001413 Solanum tuberosum PGSC0003DMG400001413 N 0.000
sr12520 Sporisorium reilianum sr12520 N 0.000
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
SPBR_07296 Sporothrix brasiliensis SPBR_07296 N 0.000
HMPREF1624_00309 Sporothrix schenckii HMPREF1624_00309 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N 0.000
estExt_fgeneshTM_pg.C_10542 Tremella mesenterica estExt_fgeneshTM_pg.C_10542 N 0.000
TRIVIDRAFT_119706 Trichoderma virens TRIVIDRAFT_119706 N 0.000
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.000
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.000