MDP0000203666 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000203666 T229010_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.761 0.732
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.761 0.732
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000203666 Homeodomain 92 152

Links

Other Homeodomain family TFs
Other Malus domestica TFs

442 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01517 Acanthocheilonema viteae nAv.1.0.1.g01517 I 0.000
ANCCAN_03696 Ancylostoma caninum ANCCAN_03696 I 0.000
ANCDUO_19178 Ancylostoma duodenale ANCDUO_19178 N 0.000
ACAC_0001014401 Angiostrongylus cantonensis ACAC_0001014401 N 0.000
ACOC_0000988901 Angiostrongylus costaricensis ACOC_0000988901 N 0.000
ASIM_0001558001 Anisakis simplex ASIM_0001558001 I 0.000
ALUE_0000232801 Ascaris lumbricoides ALUE_0000232801 I 0.000
BTMF_0001276401 Brugia timori BTMF_0001276401 I 0.000
DICVIV_02748 Dictyocaulus viviparus DICVIV_02748 N 0.000
ENSECAG00000002506 Equus caballus ENSECAG00000002506 I 0.000
Gfo_R000008 Geospiza fortis Gfo_R000008 N 0.000
HPLM_0000060301 Haemonchus placei HPLM_0000060301 I 0.000
HPBE_0001563701 Heligmosomoides bakeri HPBE_0001563701 I 0.000
nLs.2.1.2.g09719 Litomosoides sigmodontis nLs.2.1.2.g09719 I 0.000
LOAG_15485 Loa loa LOAG_15485 I 0.000
NECAME_06333 Necator americanus NECAME_06333 I 0.000
NBR_0000825001 Nippostrongylus brasiliensis NBR_0000825001 I 0.000
OESDEN_19696 Oesophagostomum dentatum OESDEN_19696 I 0.000
OESDEN_25610 Oesophagostomum dentatum OESDEN_25610 N 0.000
PEQ_0000241601 Parascaris equorum PEQ_0000241601 N 0.000
scaffold1496-EXSNAP2012.4 Pristionchus exspectatus scaffold1496-EXSNAP2012.4 N 0.000
scaffold580-EXSNAP2012.2 Pristionchus exspectatus scaffold580-EXSNAP2012.2 N 0.000
Ppa-pal-1 Pristionchus pacificus PPA02358 I 0.000
SVUK_0001504901 Strongylus vulgaris SVUK_0001504901 I 0.000
SMUV_0000918401 Syphacia muris SMUV_0000918401 I 0.000
TCNE_0001280701 Toxocara canis TCNE_0001280701 I 0.000
WUBG_02562 Wuchereria bancrofti WUBG_02562 I 0.000