orange1.1g010311m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g010311m.g T229148_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.763 0.839
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g010311m Homeodomain 14 69

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.612
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.757
Bo9g006450 Brassica oleracea Bo9g006450 I 0.618
Bra034196 Brassica rapa Bra034196 I 0.618
PK25011.1 Cannabis sativa PK25011.1 D 0.763
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.618
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.618
Ca_21400 Cicer arietinum Ca_21400 I 0.625
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.867
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.714
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.676
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.676
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.607
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.629
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.611
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.599
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.643
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.610
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.733