SPAL_0000200500 (Strongyloides papillosus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SPAL_0000200500 T236248_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NKX6-2
M05184_2.00 		Homo sapiens
DTAATTRN
NYAATTAH		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX 		0.845 0.807
NKX6-2
M05186_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX 		0.845 0.807
NKX6-2
M10711_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX62_Q2 		0.845 0.807
NKX6-2
M05185_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX 		0.845 0.807
NKX6-2
M05187_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX 		0.845 0.807
Nkx6-1
M00466_2.00 		Mus musculus
NDTDATNRN
NYNATHAHN		 PBM
Berger et al.(2008)
Nkx6-1_2825 		0.836 0.789
NKX6-1
M09151_2.00 		Homo sapiens
RAHWRATKDSNWWWTRATD
HATYAWWWNSHMATYWDTY		 Misc
Kulakovskiy et al.(2013)
NKX61_HUMAN.H11MO.0.B 		0.836 0.789
Nkx6-1
M09200_2.00 		Mus musculus
HNWRATKDNHWWWTRATDR
YHATYAWWWDNHMATYWND		 Misc
Kulakovskiy et al.(2013)
NKX61_MOUSE.H11MO.0.A 		0.836 0.789
Nkx6-1
M09573_2.00 		Mus musculus
NDTAATKR
YMATTAHN		 Misc
Heinz et al.(2010)
Islet-Nkx6.1_GSE40975 		0.836 0.789
NKX6-1
M10718_2.00 		Homo sapiens
HWTTTAATKGRWT
AWYCMATTAAAWD		 Transfac
Matys et al.(2006)
V$NKX61_01 		0.836 0.789
NKX6-1
M10719_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX61_08 		0.836 0.789
Nkx6-3
M00522_2.00 		Mus musculus
NDYDATNRN
NYNATHRHN		 PBM
Berger et al.(2008)
Nkx6-3_3446 		0.836 0.772
HGTX
M03869_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_1 		0.836 0.772
HGTX
M03870_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_2 		0.836 0.772
NKX6-3
M05242_2.00 		Homo sapiens
NWTAATGRB
VYCATTAWN		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_HT-SELEX 		0.836 0.772
HGTX
M06542_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0191.1 		0.836 0.772
HGTX
M06360_2.00 		Drosophila melanogaster
DDTAATKA
TMATTAHH		 B1H
Zhu et al.(2011)
Hgtx_Cell_FBgn0040318 		0.836 0.772
HGTX
M06361_2.00 		Drosophila melanogaster
NWTAATKA
TMATTAWN		 B1H
Zhu et al.(2011)
Hgtx_SOLEXA_FBgn0040318 		0.836 0.772
NKX6-3
M05243_2.00 		Homo sapiens
DWTAATGRB
VYCATTAWH		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_Methyl-HT-SELEX 		0.836 0.772
CBG20882
M01244_2.00 		Caenorhabditis briggsae
NDHDATDRN
NYHATHDHN		 PBM
Lambert et al.(2019)
pTH11477 		0.824 0.789
Q0N4H9_NEMVE
M02165_2.00 		Nematostella vectensis
NNYRWWNNN
NNNWWYRNN		 PBM
Weirauch et al.(2014)
pTH6101 		0.683 0.579
NEMVEDRAFT_v1g129868
M02146_2.00 		Nematostella vectensis
NYRAWNDNN
NNHNWTYRN		 PBM
Weirauch et al.(2014)
pTH5749 		0.679 0.596
NK7.1
M03847_2.00 		Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB		 SELEX
Nitta et al.(2015)
NK7.1_1 		0.613 0.579
NK7.1
M03848_2.00 		Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN		 SELEX
Nitta et al.(2015)
NK7.1_2 		0.613 0.579
NK7.1
M06524_2.00 		Drosophila melanogaster
TTAATDR
YHATTAA		 B1H
Mathelier et al.(2014)
MA0196.1 		0.613 0.579
NK7.1
M06323_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321 		0.613 0.579
NK7.1
M06324_2.00 		Drosophila melanogaster
YTAATDR
YHATTAR		 B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321 		0.613 0.579
NEMVEDRAFT_v1g101664
M02142_2.00 		Nematostella vectensis
WATCRATC
GATYGATW		 PBM
Weirauch et al.(2014)
pTH5552 		0.604 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPAL_0000200500.1 Homeodomain 366 422

Links

Other Homeodomain family TFs
Other Strongyloides papillosus TFs

309 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04392 Aegilops tauschii F775_04392 I
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I
SPL7 Arabidopsis lyrata scaffold_601959.1 I
SPL7 Arabidopsis thaliana AT5G18830 D
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I
Bo00629s160 Brassica oleracea Bo00629s160 I
Bo9g154530 Brassica oleracea Bo9g154530 I
Bra002188 Brassica rapa Bra002188 I
Bra023695 Brassica rapa Bra023695 I
PK29723.1 Cannabis sativa PK29723.1 I
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I
Carubv10002913m.g Capsella rubella Carubv10002913m.g I
Ca_00550 Cicer arietinum Ca_00550 I
Cla022022 Citrullus lanatus Cla022022 I
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I
Cucsa.253690 Cucumis sativus Cucsa.253690 I
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I
GLYMA13G28460 Glycine max GLYMA13G28460 I
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I
LPERR05G12780 Leersia perrieri LPERR05G12780 I
Lus10012782.g Linum usitatissimum Lus10012782.g I
Lus10033993.g Linum usitatissimum Lus10033993.g I
MDP0000195461 Malus domestica MDP0000195461 I
MDP0000271587 Malus domestica MDP0000271587 I
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I
MTR_2g020620 Medicago truncatula MTR_2g020620 I
mgf004695m Mimulus guttatus mgf004695m I
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I
OBART05G16150 Oryza barthii OBART05G16150 I
OB05G24080 Oryza brachyantha OB05G24080 I
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I
OLONG_015968 Oryza longistaminata OLONG_015968 I
ONIVA05G16770 Oryza nivara ONIVA05G16770 I
OPUNC05G14270 Oryza punctata OPUNC05G14270 I
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I
SPL9 Oryza sativa OS05G0408200 I
Pavir.J03653 Panicum virgatum Pavir.J03653 I
Pavir.J00965 Panicum virgatum Pavir.J00965 I
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I
Pm008092 Prunus mume Pm008092 I
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I
29726.m003959 Ricinus communis 29726.m003959 I
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I
Si021754m.g Setaria italica Si021754m.g I
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I
Sb09g020110 Sorghum bicolor Sb09g020110 I
TCM_021101 Theobroma cacao TCM_021101 I
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I
SPL7 Vitis vinifera VIT_05s0020g02160 I
GRMZM2G109354 Zea mays GRMZM2G109354 I