OMERI03G09680 (Oryza meridionalis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OMERI03G09680 T245624_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.889 0.889
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.889 0.889
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.859 0.859
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.859 0.859
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.778 0.778
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.778 0.778
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.778 0.778
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.768 0.768
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI03G09680.1 LOB 37 136

Links

Other LOB family TFs
Other Oryza meridionalis TFs

397 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG017359.1 Alligator sinensis Alligator_sinensis_CCG017359.1 I
ENSAPLG00000007946 Anas platyrhynchos ENSAPLG00000007946 I
HDX Anolis carolinensis ENSACAG00000014116 I
Afo_R014150 Aptenodytes forsteri Afo_R014150 I
Brh_R002803 Buceros rhinoceros Brh_R002803 I
HDX Callithrix jacchus ENSCJAG00000008295 I
Aan_R004747 Calypte anna Aan_R004747 I
HDX Canis familiaris ENSCAFG00000017380 I
HDX Cavia porcellus ENSCPOG00000014501 I
Cmyd_10021519 Chelonia mydas Cmyd_10021519 I
ENSCSAG00000010546 Chlorocebus sabaeus ENSCSAG00000010546 I
hdx Danio rerio ENSDARG00000079382 I
HDX Echinops telfairi ENSETEG00000018031 I
HDX Equus caballus ENSECAG00000024862 I
HDX Erinaceus europaeus ENSEEUG00000011626 I
HDX Felis catus ENSFCAG00000005781 I
ENSFALG00000004050 Ficedula albicollis ENSFALG00000004050 I
ENSGMOG00000004501 Gadus morhua ENSGMOG00000004501 I
HDX Gallus gallus ENSGALG00000007041 I
hdx Gasterosteus aculeatus ENSGACG00000018543 I
Gfo_R008526 Geospiza fortis Gfo_R008526 I
HDX Gorilla gorilla ENSGGOG00000005551 I
HDX Homo sapiens ENSG00000165259 D
ENSLACG00000001553 Latimeria chalumnae ENSLACG00000001553 I
ENSLOCG00000015046 Lepisosteus oculatus ENSLOCG00000015046 I
HDX Loxodonta africana ENSLAFG00000028655 I
ENSP00000297977 Macaca fascicularis ENSP00000297977 I
HDX Macaca mulatta ENSMMUG00000020536 I
HDX Meleagris gallopavo ENSMGAG00000004732 I
HDX Monodelphis domestica ENSMODG00000014307 I
ENSMPUG00000006315 Mustela putorius furo ENSMPUG00000006315 I
Hdx Mus musculus ENSMUSG00000034551 D
ENSNLEG00000002624 Nomascus leucogenys ENSNLEG00000002624 I
Ogr06876 Ophisaurus gracilis Ogr06876 I
ENSONIG00000017662 Oreochromis niloticus ENSONIG00000017662 I
HDX Oryctolagus cuniculus ENSOCUG00000000903 I
hdx Oryzias latipes ENSORLG00000008466 I
HDX Otolemur garnettii ENSOGAG00000031446 I
ENSOARG00000001832 Ovis aries ENSOARG00000001832 I
HDX Pan troglodytes ENSPTRG00000022065 I
ENSPANG00000014327 Papio anubis ENSPANG00000014327 I
ENSPSIG00000003320 Pelodiscus sinensis ENSPSIG00000003320 I
ENSPFOG00000004291 Poecilia formosa ENSPFOG00000004291 I
Pvit_02951 Pogona vitticeps Pvit_02951 I
ENSPPYG00000020514 Pongo abelii ENSPPYG00000020514 I
Hdx Rattus norvegicus ENSRNOG00000037799 I
ENSSHAG00000014376 Sarcophilus harrisii ENSSHAG00000014376 I
HDX Sorex araneus ENSSARG00000009351 I
HDX Taeniopygia guttata ENSTGUG00000002499 I
hdx Takifugu rubripes ENSTRUG00000008150 I
ENSTSYG00000009619 Tarsius syrichta ENSTSYG00000009619 I
rps6kal Tetraodon nigroviridis ENSTNIG00000015774 I
HDX Tursiops truncatus ENSTTRG00000000100 I
HDX Vicugna pacos ENSVPAG00000003255 I
hdx Xenopus tropicalis XB-GENE-853748 I
ENSXMAG00000011901 Xiphophorus maculatus ENSXMAG00000011901 I