YALI0_F18788g (Yarrowia lipolytica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 YALI0_F18788g T256838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.729 0.729
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.729 0.729
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.729 0.729
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAG78403 MADS box 10 57

Links

Other MADS box family TFs
Other Yarrowia lipolytica TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI5G27400 Brachypodium distachyon BRADI5G27400 N
LPERR04G26090 Leersia perrieri LPERR04G26090 N
Lus10024753.g Linum usitatissimum Lus10024753.g N
Lus10009770.g Linum usitatissimum Lus10009770.g N
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I
MDP0000256621 Malus domestica MDP0000256621 I
OBART04G30660 Oryza barthii OBART04G30660 N
OB04G37650 Oryza brachyantha OB04G37650 N
ORGLA04G0270000 Oryza glaberrima ORGLA04G0270000 N
OGLUM04G30530 Oryza glumaepatula OGLUM04G30530 N
BGIOSGA014036 Oryza indica BGIOSGA014036 N
ONIVA04G29840 Oryza nivara ONIVA04G29840 N
OPUNC04G28180 Oryza punctata OPUNC04G28180 N
ARF13 Oryza sativa OS04G0690600 N
Pavir.J03524 Panicum virgatum Pavir.J03524 I
Pavir.J37640 Panicum virgatum Pavir.J37640 I
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I
29908.m005953 Ricinus communis 29908.m005953 I
Si021833m.g Setaria italica Si021833m.g N