Pavir.Aa01540 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Aa01540 T258846_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.958 0.958
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.833 0.833
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.833 0.833
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.708 0.708
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01540.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Panicum virgatum TFs

628 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004033 Aedes aegypti AAEL004033 N 0.000
ENSAPLG00000005538 Anas platyrhynchos ENSAPLG00000005538 I 0.000
ANCDUO_24100 Ancylostoma duodenale ANCDUO_24100 N 0.000
ASIM_0001695301 Anisakis simplex ASIM_0001695301 N 0.000
AALB008452 Anopheles albimanus AALB008452 N 0.000
AATE008437 Anopheles atroparvus AATE008437 N 0.000
ACUA026159 Anopheles culicifacies ACUA026159 N 0.000
ADIR006386 Anopheles dirus ADIR006386 N 0.000
AEPI002734 Anopheles epiroticus AEPI002734 N 0.000
AFAF005788 Anopheles farauti AFAF005788 N 0.000
AMAM013696 Anopheles maculatus AMAM013696 N 0.000
AMEC022035 Anopheles melas AMEC022035 N 0.000
AMEM013182 Anopheles merus AMEM013182 N 0.000
AMIN002697 Anopheles minimus AMIN002697 N 0.000
AQUA009532 Anopheles quadriannulatus AQUA009532 N 0.000
ASIS022603 Anopheles sinensis ASIS022603 N 0.000
Afo_R002915 Aptenodytes forsteri Afo_R002915 N 0.000
ACEP17328 Atta cephalotes ACEP17328 N 0.000
BGIBMGA010051 Bombyx mori BGIBMGA010051 N 0.000
Bm5188 Brugia malayi Bm5188 N 0.000
CapteG6193 Capitella teleta CapteG6193 N 0.000
NKX6-1 Choloepus hoffmanni ENSCHOG00000005454 I 0.000
CLEC002616 Cimex lectularius CLEC002616 N 0.000
CpipJ_CPIJ001377 Culex pipiens CpipJ_CPIJ001377 N 0.000
CPIJ001377 Culex quinquefasciatus CPIJ001377 N 0.000
KGM_13904 Danaus plexippus KGM_13904 N 0.000
YQE_09155 Dendroctonus ponderosae YQE_09155 N 0.000
DICVIV_02945 Dictyocaulus viviparus DICVIV_02945 N 0.000
ECPE_0000358001 Echinostoma caproni ECPE_0000358001 N 0.000
EVEC_0000660801 Enterobius vermicularis EVEC_0000660801 N 0.000
ENSECAG00000018325 Equus caballus ENSECAG00000018325 I 0.000
Gfo_R008628 Geospiza fortis Gfo_R008628 I 0.000
HHAL007703-PA Halyomorpha halys HHAL007703-PA N 0.000
Hsal_06171--XP_001121097.1_APIME Harpegnathos saltator Hsal_06171--XP_001121097.1_APIME N 0.000
ISCW014430 Ixodes scapularis ISCW014430 N 0.000
nLs.2.1.2.g06018 Litomosoides sigmodontis nLs.2.1.2.g06018 N 0.000
LCUP008694 Lucilia cuprina LCUP008694 N 0.000
ENSMEUG00000009353 Macropus eugenii ENSMEUG00000009353 I 0.000
MESCA000156 Megaselia scalaris MESCA000156 I 0.000
MCINX004710 Melitaea cinxia MCINX004710 N 0.000
augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0 N 0.000
ENSMICG00000006922 Microcebus murinus ENSMICG00000006922 I 0.000
Myotis_brandtii_NKX6_10030510 Myotis brandtii Myotis_brandtii_NKX6_10030510 N 0.000
Ocbimv22025901m.g Octopus bimaculoides Ocbimv22025901m.g N 0.000
OFLC_0001516501 Onchocerca flexuosa OFLC_0001516501 N 0.000
ENSOANG00000006212 Ornithorhynchus anatinus ENSOANG00000006212 I 0.000
ENSOARG00000007317 Ovis aries ENSOARG00000007317 N 0.000
PHUM359870 Pediculus humanus PHUM359870 N 0.000
PPAI007703 Phlebotomus papatasi PPAI007703 N 0.000
ENSPFOG00000002761 Poecilia formosa ENSPFOG00000002761 I 0.000
scaffold37-EXSNAP2012.8 Pristionchus exspectatus scaffold37-EXSNAP2012.8 N 0.000
Ppa-cog-1 Pristionchus pacificus PPA04716 N 0.000
NKX6-2 Procavia capensis ENSPCAG00000000708 N 0.000
PXEA_0000446101 Protopolystoma xenopodis PXEA_0000446101 N 0.000
nRc.2.0.1.g06912 Romanomermis culicivorax nRc.2.0.1.g06912 N 0.000
ENSSHAG00000002937 Sarcophilus harrisii ENSSHAG00000002937 I 0.000
SCUD_0002097601 Schistosoma curassoni SCUD_0002097601 N 0.000
A_02867 Schistosoma haematobium A_02867 N 0.000
Sjc_0111830 Schistosoma japonicum Sjc_0111830 N 0.000
SROB_0001257001 Schistosoma rodhaini SROB_0001257001 N 0.000
SINV25324 Solenopsis invicta SINV25324 I 0.000
NKX6-1 Sus scrofa ENSSSCG00000009232 I 0.000
TCNE_0001839401 Toxocara canis TCNE_0001839401 N 0.000
D917_05078 Trichinella nativa D917_05078 N 0.000
D917_08408 Trichinella nativa D917_08408 N 0.000
TRE_0000644601 Trichobilharzia regenti TRE_0000644601 N 0.000
WUBG_08661 Wuchereria bancrofti WUBG_08661 N 0.000
L798_02155 Zootermopsis nevadensis L798_02155 I 0.000