ALUE_0001693901 (Ascaris lumbricoides)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 ALUE_0001693901 T259528_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.955 0.955
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.955 0.955
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.955 0.955
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.909 0.909
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.909 0.909
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.909 0.909
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.909 0.909
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.909 0.909
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.909 0.909
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.909 0.909
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.909 0.909
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.909 0.909
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.909 0.909
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.909 0.909
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.909 0.909
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.909 0.909
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.909 0.909
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.909 0.909
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.909 0.909
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.909 0.909
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.909 0.909
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.909 0.909
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.909 0.909
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.909 0.909
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.909 0.909
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.727 0.727
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		0.727 0.727
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		0.727 0.727
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.727 0.727
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		0.727 0.727
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.727 0.727
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.727 0.727
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.727 0.727
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0001693901-mRNA-1 MADS box 9 30

Links

Other MADS box family TFs
Other Ascaris lumbricoides TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010925 Aedes aegypti AAEL010925 I 0.905
ANCDUO_18278 Ancylostoma duodenale ANCDUO_18278 I 0.957
ANCDUO_13359 Ancylostoma duodenale ANCDUO_13359 I 0.917
AALB009947 Anopheles albimanus AALB009947 I 0.840
AARA006326 Anopheles arabiensis AARA006326 I 0.913
AATE005744 Anopheles atroparvus AATE005744 I 0.875
ACHR006794 Anopheles christyi ACHR006794 I 0.700
ACOM041695 Anopheles coluzzii ACOM041695 I 0.913
ACUA001543 Anopheles culicifacies ACUA001543 I 0.875
AEPI007009 Anopheles epiroticus AEPI007009 I 0.955
AFAF006302 Anopheles farauti AFAF006302 I 0.913
AFUN006149 Anopheles funestus AFUN006149 I 0.955
AGAP010511 Anopheles gambiae AGAP010511 I 0.913
AMAM005702 Anopheles maculatus AMAM005702 I 0.875
AMEC009624 Anopheles melas AMEC009624 I 0.913
AMIN001256 Anopheles minimus AMIN001256 I 0.913
AQUA001309 Anopheles quadriannulatus AQUA001309 I 0.913
ASTEI07121 Anopheles stephensi ASTEI07121 I 0.875
BGIBMGA001382 Bombyx mori BGIBMGA001382 I 0.875
SRF Choloepus hoffmanni ENSCHOG00000008671 I 0.909
CLEC013393 Cimex lectularius CLEC013393 I 0.875
CpipJ_CPIJ008336 Culex pipiens CpipJ_CPIJ008336 I 0.778
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
CPIJ008336 Culex quinquefasciatus CPIJ008336 I 0.778
KGM_22252 Danaus plexippus KGM_22252 I 0.875
YQE_03076 Dendroctonus ponderosae YQE_03076 I 0.840
HHAL001484-PA Halyomorpha halys HHAL001484-PA I 0.875
HMEL017831 Heliconius melpomene HMEL017831 I 0.875
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.875
LCUP011662 Lucilia cuprina LCUP011662 I 0.875
MESCA004860 Megaselia scalaris MESCA004860 I 0.808
OFLC_0001346401 Onchocerca flexuosa OFLC_0001346401 I 0.815
SRF Oryzias latipes ENSORLG00000013036 I 0.833
PPAI006358 Phlebotomus papatasi PPAI006358 I 0.700
RPRC001752 Rhodnius prolixus RPRC001752 I 0.778
18574_YMR042W Saccharomyces bayanus 18574_YMR042W I 0.727
ARG80 Saccharomyces cerevisiae YMR042W D 0.727
17148_YMR042W Saccharomyces paradoxus 17148_YMR042W I 0.727
SINV23963 Solenopsis invicta SINV23963 I 0.875
J056_002827 Wallemia ichthyophaga J056_002827 I 0.727
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I 0.727
ENSXMAG00000018559 Xiphophorus maculatus ENSXMAG00000018559 I 0.800