Bo1g098860 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g098860 T267090_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.757 0.796
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.727 0.720
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.727 0.720
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.708 0.688
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.708 0.688
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.703 0.720
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.669 0.753
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.666 0.656
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.666 0.656
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.666 0.699
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.664 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g098860.1 Myb 20 67
Bo1g098860.1 Myb 73 118

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

589 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MBD11 Arabidopsis lyrata scaffold_301848.1 N
MBD11 Arabidopsis thaliana AT3G15790 N
Bra027207 Brassica rapa Bra027207 N
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N
Ca_19192 Cicer arietinum Ca_19192 N
Cla012920 Citrullus lanatus Cla012920 N
Cla016961 Citrullus lanatus Cla016961 N
Cucsa.096390 Cucumis sativus Cucsa.096390 N
Cucsa.132180 Cucumis sativus Cucsa.132180 N
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N
Lus10002168.g Linum usitatissimum Lus10002168.g N
MDP0000462461 Malus domestica MDP0000462461 N
Pm013666 Prunus mume Pm013666 N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N