Bo5g009290 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo5g009290 T267353_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB60
M07001_2.00 		Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND		 Dap-seq
OMalley et al.(2016)
MYB60_col 		0.827 0.978
MYB30
M07089_2.00 		Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN		 Dap-seq
OMalley et al.(2016)
MYB30_col_a 		0.790 0.900
MYB30
M07090_2.00 		Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD		 Dap-seq
OMalley et al.(2016)
MYB30_colamp_a 		0.790 0.900
MYB94
M02298_2.00 		Arabidopsis thaliana
DACCGGTH
DACCGGTH		 PBM
Weirauch et al.(2014)
pTH7085 		0.769 0.889
MYB94
M07094_2.00 		Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD		 Dap-seq
OMalley et al.(2016)
MYB94_col_b 		0.769 0.889
ATY13
M07035_2.00 		Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_col_a 		0.759 0.900
ATY13
M07036_2.00 		Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_colamp_a 		0.759 0.900
MYB96
M07153_2.00 		Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD		 Dap-seq
OMalley et al.(2016)
MYB96_colamp_a 		0.751 0.889
MYB96
M07154_2.00 		Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR		 Dap-seq
OMalley et al.(2016)
MYB96_col_b 		0.751 0.889
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g009290.1 Myb 14 61
Bo5g009290.1 Myb 67 109

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04223 Aegilops tauschii F775_04223 I 0.000
F775_43210 Aegilops tauschii F775_43210 I 0.000
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.000
LPERR06G13350 Leersia perrieri LPERR06G13350 N 0.000
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.000
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.000
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.000
OBART09G00850 Oryza barthii OBART09G00850 N 0.000
OBART06G13310 Oryza barthii OBART06G13310 N 0.000
OBART01G45740 Oryza barthii OBART01G45740 N 0.000
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.000
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.000
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.000
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.000
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.000
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.000
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.000
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.000
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.000
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.000
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.000
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.000
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.000
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.000
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.000
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.000
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.000
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.000
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.000
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.000
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.000
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.000
OS01G0975800 Oryza sativa OS01G0975800 N 0.000
OS09G0116800 Oryza sativa OS09G0116800 N 0.000
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.000
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.000
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.000
Pavir.Fb00782 Panicum virgatum Pavir.Fb00782 I 0.000
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.000
PDK_20s1363011g003 Phoenix dactylifera PDK_20s1363011g003 N 0.000
Si019951m.g Setaria italica Si019951m.g I 0.000
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.000
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.000
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.000
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.000
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.000
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.000
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.000
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.000
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.000