Bra006102 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra006102 T267768_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.810 0.954
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.745 0.863
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.741 0.863
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.725 0.824
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.725 0.824
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.673 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006102.1-P Myb 37 75
Bra006102.1-P Myb 81 127
Bra006102.1-P Myb 133 177

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
Aquca_013_00703 Aquilegia coerulea Aquca_013_00703 N 0.000
fgenesh2_kg.5__2532__AT3G60670.1 Arabidopsis lyrata fgenesh2_kg.5__2532__AT3G60670.1 N 0.000
AT3G60670 Arabidopsis thaliana AT3G60670 N 0.000
Bostr.13158s0066 Boechera stricta Bostr.13158s0066 N 0.000
Bo4g104880 Brassica oleracea Bo4g104880 N 0.000
Bo8g095360 Brassica oleracea Bo8g095360 N 0.000
Bra007550 Brassica rapa Bra007550 N 0.000
Bra014478 Brassica rapa Bra014478 N 0.000
PK01122.1 Cannabis sativa PK01122.1 N 0.000
Cagra.6011s0013 Capsella grandiflora Cagra.6011s0013 N 0.000
Carubv10019494m.g Capsella rubella Carubv10019494m.g N 0.000
evm.TU.supercontig_145.1 Carica papaya evm.TU.supercontig_145.1 N 0.000
Cla006768 Citrullus lanatus Cla006768 N 0.000
Cucsa.132770 Cucumis sativus Cucsa.132770 N 0.000
Cucsa.120560 Cucumis sativus Cucsa.120560 N 0.000
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N 0.000
Eucgr.E01501 Eucalyptus grandis Eucgr.E01501 N 0.000
Thhalv10006374m.g Eutrema salsugineum Thhalv10006374m.g N 0.000
GLYMA11G17770 Glycine max GLYMA11G17770 N 0.000
GLYMA01G17580 Glycine max GLYMA01G17580 N 0.000
Gorai.004G163500 Gossypium raimondii Gorai.004G163500 N 0.000
Gorai.007G089600 Gossypium raimondii Gorai.007G089600 N 0.000
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N 0.000
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N 0.000
cassava14439.m1 Manihot esculenta cassava14439.m1 N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
Pavir.J35161 Panicum virgatum Pavir.J35161 N 0.000
POPTR_0014s05840 Populus trichocarpa POPTR_0014s05840 N 0.000
Pm017841 Prunus mume Pm017841 N 0.000
PRUPE_ppa023785mg Prunus persica PRUPE_ppa023785mg N 0.000
30174.m008836 Ricinus communis 30174.m008836 N 0.000
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N 0.000
SapurV1A.0382s0270 Salix purpurea SapurV1A.0382s0270 N 0.000
Solyc01g091000.2 Solanum lycopersicum Solyc01g091000.2 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
TCM_005554 Theobroma cacao TCM_005554 N 0.000
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N 0.000
VIT_02s0154g00150 Vitis vinifera VIT_02s0154g00150 N 0.000
VIT_00s0233g00100 Vitis vinifera VIT_00s0233g00100 N 0.000