Bra028654 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra028654 T268021_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.807 0.946
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.807 0.946
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.807 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028654.1-P Myb 9 58
Bra028654.1-P Myb 115 160

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.802
SRM1 Arabidopsis thaliana AT5G08520 D 0.807
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.795
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.691
Bo2g009130 Brassica oleracea Bo2g009130 I 0.872
Bo9g174380 Brassica oleracea Bo9g174380 I 0.840
Bo3g004970 Brassica oleracea Bo3g004970 I 0.883
Bra009346 Brassica rapa Bra009346 I 0.819
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.811
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.811
Cla009230 Citrullus lanatus Cla009230 I 0.671
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.692
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.692
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.671
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.672
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.792
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.662
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.663
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.684
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.663
30131.m007263 Ricinus communis 30131.m007263 I 0.678
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.662