Bra009346 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra009346 T267814_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.825 0.946
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.825 0.946
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.825 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009346.1-P Myb 112 157

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g174380 Brassica oleracea Bo9g174380 I 0.888
Bo3g004970 Brassica oleracea Bo3g004970 I 0.846
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.841
Bo2g009130 Brassica oleracea Bo2g009130 I 0.835
SRM1 Arabidopsis thaliana AT5G08520 D 0.825
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.820
Bra028654 Brassica rapa Bra028654 I 0.819
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.813
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.800
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.800
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.682
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.671
OBART04G29570 Oryza barthii OBART04G29570 N 0.671
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.671
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.671
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.671
OS04G0676700 Oryza sativa OS04G0676700 N 0.671
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.666
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.666
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.665
30131.m007263 Ricinus communis 30131.m007263 I 0.665
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.665
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.662
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.661
OPUNC04G27130 Oryza punctata OPUNC04G27130 N 0.661