OGLUM02G28780 (Oryza glumaepatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OGLUM02G28780 T275676_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.774 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.774 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.774 0.804
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.771 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.771 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.771 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.771 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.771 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.783
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.753 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.753 0.804
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.744 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.698 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.698 0.739
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.671 0.630
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.671 0.630
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.671 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM02G28780.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Oryza glumaepatula TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.000
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.000
PK18401.1 Cannabis sativa PK18401.1 D 0.000
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.000
Cla014511 Citrullus lanatus Cla014511 I 0.000
Cla001685 Citrullus lanatus Cla001685 I 0.000
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.000
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.000
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.000
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.000
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.000
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.000
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.000
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.000
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.000
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.000
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.000
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.000
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.000
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.000
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.000
MDP0000275844 Malus domestica MDP0000275844 I 0.000
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.000
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.000
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.000
mgf017107m Mimulus guttatus mgf017107m I 0.000
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.000
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.000
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.000
OS02G0433600 Oryza sativa OS02G0433600 I 0.000
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.000
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.000
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.000
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.000
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.000
Pm026758 Prunus mume Pm026758 I 0.000
Pm021043 Prunus mume Pm021043 I 0.000
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.000
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.000
29711.m000322 Ricinus communis 29711.m000322 I 0.000
29830.m001386 Ricinus communis 29830.m001386 I 0.000
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.000
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.000
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.000
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.000
TCM_000204 Theobroma cacao TCM_000204 I 0.000
TCM_006692 Theobroma cacao TCM_006692 I 0.000
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.000
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.000