POPTR_0015s05430 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0015s05430 T278472_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.853 0.870
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.853 0.870
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.853 0.870
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.853 0.870
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.853 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.843 0.913
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.814 0.826
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.804 0.783
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.804 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.769 0.804
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.769 0.804
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.727 0.783
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.727 0.783
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.727 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s05430.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g126940 Brassica oleracea Bo4g126940 I 0.000
Bo7g040830 Brassica oleracea Bo7g040830 I 0.000
Bo1g102270 Brassica oleracea Bo1g102270 I 0.000
Bra014923 Brassica rapa Bra014923 I 0.000
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.000
Cla021854 Citrullus lanatus Cla021854 I 0.000
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I 0.000
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.000
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.000
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.000
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.000
GLYMA20G22010 Glycine max GLYMA20G22010 I 0.000
GLYMA10G01010 Glycine max GLYMA10G01010 I 0.000
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.000
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.000
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.000
cassava35418.valid.m1 Manihot esculenta cassava35418.valid.m1 N 0.000
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.000
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N 0.000
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.000
29603.m000513 Ricinus communis 29603.m000513 N 0.000
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.000
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.000