Lus10022186.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10022186.g T050222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.857 0.712
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.857 0.712
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10022186 bHLH 64 115

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla021854 Citrullus lanatus Cla021854 I 0.889
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.889
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.879
cassava35418.valid.m1 Manihot esculenta cassava35418.valid.m1 N 0.877
Bo4g126940 Brassica oleracea Bo4g126940 I 0.874
MTR_1g043430 Medicago truncatula MTR_1g043430 I 0.868
Ca_23174 Cicer arietinum Ca_23174 I 0.868
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.866
Lus10021876.g Linum usitatissimum Lus10021876.g N 0.866
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.866
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.866
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.866
BHLH104 Arabidopsis thaliana AT4G14410 D 0.857
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.857
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.857
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.857
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.857
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.857
Bra041033 Brassica rapa Bra041033 I 0.854
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.854
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N 0.842
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.842
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.842
Bo1g102270 Brassica oleracea Bo1g102270 I 0.839
Bo7g040830 Brassica oleracea Bo7g040830 I 0.839
Bra014923 Brassica rapa Bra014923 I 0.839
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.839