CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.0597s0053
(
Boechera stricta
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Bostr.0597s0053
T049049_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH104
M01706_2.00
Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC
PBM
Weirauch et al.(2014)
pTH7365
0.914
0.942
BHLH104
M06737_2.00
Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC
Dap-seq
OMalley et al.(2016)
bHLH104_col_b
0.914
0.942
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.0597s0053.1.p
bHLH
129
180
RGGTKACRERLRREKLNERFTDLSSVLEPGRTPKTDKPAILDDAIRILNQLR
Links
Other
bHLH
family TFs
Other
Boechera stricta
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH104
Arabidopsis thaliana
AT4G14410
D
0.914
bHLH104
Arabidopsis lyrata
fgenesh2_kg.7__2895__AT4G14410.2
I
0.914
Cagra.1718s0002
Capsella grandiflora
Cagra.1718s0002
I
0.914
Carubv10005335m.g
Capsella rubella
Carubv10005335m.g
I
0.914
Thhalv10025927m.g
Eutrema salsugineum
Thhalv10025927m.g
I
0.914
Bra041033
Brassica rapa
Bra041033
I
0.911
Bo4g126940
Brassica oleracea
Bo4g126940
I
0.891
MTR_1g043430
Medicago truncatula
MTR_1g043430
I
0.878
Ca_23174
Cicer arietinum
Ca_23174
I
0.878
evm.TU.supercontig_44.78
Carica papaya
evm.TU.supercontig_44.78
I
0.859
Cla021854
Citrullus lanatus
Cla021854
I
0.857
Cucsa.255290
Cucumis sativus
Cucsa.255290
I
0.857
Lus10022186.g
Linum usitatissimum
Lus10022186.g
I
0.857
Bo1g102270
Brassica oleracea
Bo1g102270
I
0.856
Bo7g040830
Brassica oleracea
Bo7g040830
I
0.856
Bra014923
Brassica rapa
Bra014923
I
0.856
gene11436-v1.0-hybrid
Fragaria vesca
gene11436-v1.0-hybrid
I
0.856
PRUPE_ppa011217mg
Prunus persica
PRUPE_ppa011217mg
I
0.846
Ciclev10005872m.g
Citrus clementina
Ciclev10005872m.g
I
0.846
orange1.1g028060m.g
Citrus sinensis
orange1.1g028060m.g
I
0.846
Gorai.011G172500
Gossypium raimondii
Gorai.011G172500
I
0.844
GLYMA10G01010
Glycine max
GLYMA10G01010
I
0.842
GLYMA20G22010
Glycine max
GLYMA20G22010
I
0.842
Solyc10g006510.2
Solanum lycopersicum
Solyc10g006510.2
I
0.842