gene11436-v1.0-hybrid (Fragaria vesca)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gene11436-v1.0-hybrid T049843_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.856 0.765
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.856 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna11436.1-v1.0-hybrid bHLH 75 125

Links

Other bHLH family TFs
Other Fragaria vesca TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.911
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.898
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I 0.898
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.898
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.887
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.887
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.887
Bo1g102270 Brassica oleracea Bo1g102270 I 0.879
Bo4g126940 Brassica oleracea Bo4g126940 I 0.879
Bo7g040830 Brassica oleracea Bo7g040830 I 0.879
Bra014923 Brassica rapa Bra014923 I 0.879
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.875
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.874
Lus10021876.g Linum usitatissimum Lus10021876.g N 0.874
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.874
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N 0.863
Bra041033 Brassica rapa Bra041033 I 0.859
BHLH104 Arabidopsis thaliana AT4G14410 D 0.856
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.856
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.856
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.856
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.856
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.856
GLYMA10G01010 Glycine max GLYMA10G01010 I 0.854
GLYMA20G22010 Glycine max GLYMA20G22010 I 0.854
29603.m000513 Ricinus communis 29603.m000513 N 0.848
Cla021854 Citrullus lanatus Cla021854 I 0.839
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.839
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.839