Ciclev10005872m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10005872m.g T049479_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.846 0.750
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.846 0.750
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10005872m bHLH 60 111
Ciclev10005930m bHLH 46 97

Links

Other bHLH family TFs
Other Citrus clementina TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.914
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.902
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.898
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.889
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.878
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.878
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.878
GLYMA10G01010 Glycine max GLYMA10G01010 I 0.870
GLYMA20G22010 Glycine max GLYMA20G22010 I 0.870
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.865
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.865
Lus10021876.g Linum usitatissimum Lus10021876.g N 0.865
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.865
29603.m000513 Ricinus communis 29603.m000513 N 0.864
Bo1g102270 Brassica oleracea Bo1g102270 I 0.863
Bo4g126940 Brassica oleracea Bo4g126940 I 0.863
Bo7g040830 Brassica oleracea Bo7g040830 I 0.863
Bra014923 Brassica rapa Bra014923 I 0.863
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N 0.853
BHLH104 Arabidopsis thaliana AT4G14410 D 0.846
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.846
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.846
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.846
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.846
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.846
Bra041033 Brassica rapa Bra041033 I 0.843