Cagra.1718s0002 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.1718s0002 T049267_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.914 1.000
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1718s0002.1.p bHLH 132 181

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D 0.914
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.914
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.914
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.914
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.914
Bra041033 Brassica rapa Bra041033 I 0.911
Bo4g126940 Brassica oleracea Bo4g126940 I 0.891
MTR_1g043430 Medicago truncatula MTR_1g043430 I 0.878
Ca_23174 Cicer arietinum Ca_23174 I 0.878
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.859
Cla021854 Citrullus lanatus Cla021854 I 0.857
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.857
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.857
Bo1g102270 Brassica oleracea Bo1g102270 I 0.856
Bo7g040830 Brassica oleracea Bo7g040830 I 0.856
Bra014923 Brassica rapa Bra014923 I 0.856
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.856
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.846
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I 0.846
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.846
Gorai.011G172500 Gossypium raimondii Gorai.011G172500 I 0.844
GLYMA10G01010 Glycine max GLYMA10G01010 I 0.842
GLYMA20G22010 Glycine max GLYMA20G22010 I 0.842
Solyc10g006510.2 Solanum lycopersicum Solyc10g006510.2 I 0.842