CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Solyc09g014250.2
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc09g014250.2
T280232_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.718
0.840
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN
NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.709
0.840
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN
NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.680
0.819
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN
NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.680
0.819
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc09g014250.2.1
Myb
135
182
GVPWTEEEHKQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_009_00736
Aquilegia coerulea
Aquca_009_00736
I
0.664
fgenesh2_kg.4__1876__AT2G38090.1
Arabidopsis lyrata
fgenesh2_kg.4__1876__AT2G38090.1
I
0.695
AT2G38090
Arabidopsis thaliana
AT2G38090
D
0.718
Bostr.23794s0264
Boechera stricta
Bostr.23794s0264
I
0.707
Bo3g032160
Brassica oleracea
Bo3g032160
I
0.718
Bo4g029810
Brassica oleracea
Bo4g029810
I
0.718
Bo4g187390
Brassica oleracea
Bo4g187390
I
0.707
Bra000038
Brassica rapa
Bra000038
I
0.718
Bra005139
Brassica rapa
Bra005139
I
0.707
Bra017138
Brassica rapa
Bra017138
I
0.707
PK27693.1
Cannabis sativa
PK27693.1
D
0.709
PK27213.1
Cannabis sativa
PK27213.1
D
0.680
Cagra.0090s0025
Capsella grandiflora
Cagra.0090s0025
I
0.718
Carubv10023736m.g
Capsella rubella
Carubv10023736m.g
I
0.718
evm.TU.supercontig_1130.1
Carica papaya
evm.TU.supercontig_1130.1
I
0.750
evm.TU.supercontig_112.58
Carica papaya
evm.TU.supercontig_112.58
I
0.708
Ca_19327
Cicer arietinum
Ca_19327
I
0.713
Ca_12513
Cicer arietinum
Ca_12513
I
0.664
Cla004397
Citrullus lanatus
Cla004397
I
0.700
Cla018243
Citrullus lanatus
Cla018243
I
0.697
Cla018399
Citrullus lanatus
Cla018399
I
0.685
Ciclev10012285m.g
Citrus clementina
Ciclev10012285m.g
I
0.733
Ciclev10028910m.g
Citrus clementina
Ciclev10028910m.g
I
0.700
orange1.1g021756m.g
Citrus sinensis
orange1.1g021756m.g
I
0.733
orange1.1g021816m.g
Citrus sinensis
orange1.1g021816m.g
I
0.700
Cucsa.176140
Cucumis sativus
Cucsa.176140
I
0.700
Cucsa.164580
Cucumis sativus
Cucsa.164580
I
0.680
Cucsa.067080
Cucumis sativus
Cucsa.067080
I
0.685
Eucgr.B02800
Eucalyptus grandis
Eucgr.B02800
I
0.679
Thhalv10017008m.g
Eutrema salsugineum
Thhalv10017008m.g
I
0.695
gene07984-v1.0-hybrid
Fragaria vesca
gene07984-v1.0-hybrid
I
0.701
gene18815-v1.0-hybrid
Fragaria vesca
gene18815-v1.0-hybrid
I
0.712
GLYMA11G22960
Glycine max
GLYMA11G22960
I
0.677
GLYMA02G42140
Glycine max
GLYMA02G42140
I
0.668
GLYMA03G14440
Glycine max
GLYMA03G14440
I
0.734
GLYMA02G39000
Glycine max
GLYMA02G39000
I
0.675
GLYMA01G27720
Glycine max
GLYMA01G27720
I
0.734
GLYMA07G17660
Glycine max
GLYMA07G17660
I
0.733
GLYMA11G34930
Glycine max
GLYMA11G34930
I
0.665
GLYMA14G37050
Glycine max
GLYMA14G37050
I
0.692
GLYMA18G03430
Glycine max
GLYMA18G03430
I
0.665
GLYMA18G42530
Glycine max
GLYMA18G42530
I
0.733
Gorai.002G261600
Gossypium raimondii
Gorai.002G261600
I
0.775
Gorai.006G180900
Gossypium raimondii
Gorai.006G180900
I
0.695
Gorai.007G378300
Gossypium raimondii
Gorai.007G378300
I
0.708
Gorai.009G093700
Gossypium raimondii
Gorai.009G093700
I
0.698
Gorai.012G112000
Gossypium raimondii
Gorai.012G112000
I
0.771
Lus10018209.g
Linum usitatissimum
Lus10018209.g
I
0.704
Lus10040696.g
Linum usitatissimum
Lus10040696.g
I
0.693
Lus10035518.g
Linum usitatissimum
Lus10035518.g
I
0.693
MDP0000142580
Malus domestica
MDP0000142580
I
0.736
MDP0000221993
Malus domestica
MDP0000221993
I
0.736
cassava43688.valid.m1
Manihot esculenta
cassava43688.valid.m1
I
0.775
cassava30173.valid.m1
Manihot esculenta
cassava30173.valid.m1
I
0.749
cassava23356.valid.m1
Manihot esculenta
cassava23356.valid.m1
I
0.714
cassava23290.valid.m1
Manihot esculenta
cassava23290.valid.m1
I
0.669
MTR_5g081860
Medicago truncatula
MTR_5g081860
I
0.674
MTR_3g462790
Medicago truncatula
MTR_3g462790
I
0.674
MTR_5g069710
Medicago truncatula
MTR_5g069710
I
0.671
MTR_7g067080
Medicago truncatula
MTR_7g067080
I
0.724
POPTR_0006s09860
Populus trichocarpa
POPTR_0006s09860
I
0.761
POPTR_0009s04730
Populus trichocarpa
POPTR_0009s04730
I
0.677
POPTR_0016s11980
Populus trichocarpa
POPTR_0016s11980
I
0.770
Pm000529
Prunus mume
Pm000529
I
0.663
Pm002536
Prunus mume
Pm002536
I
0.737
PRUPE_ppa009103mg
Prunus persica
PRUPE_ppa009103mg
I
0.737
28288.m000014
Ricinus communis
28288.m000014
I
0.766
29681.m001296
Ricinus communis
29681.m001296
I
0.719
SapurV1A.3589s0010
Salix purpurea
SapurV1A.3589s0010
I
0.770
SapurV1A.0778s0020
Salix purpurea
SapurV1A.0778s0020
I
0.770
SapurV1A.0001s0790
Salix purpurea
SapurV1A.0001s0790
I
0.740
Solyc10g076820.1
Solanum lycopersicum
Solyc10g076820.1
I
0.777
Solyc06g076770.2
Solanum lycopersicum
Solyc06g076770.2
I
0.685
PGSC0003DMG400030348
Solanum tuberosum
PGSC0003DMG400030348
I
0.685
PGSC0003DMG400020344
Solanum tuberosum
PGSC0003DMG400020344
I
0.909
PGSC0003DMG400019129
Solanum tuberosum
PGSC0003DMG400019129
I
0.777
TCM_021750
Theobroma cacao
TCM_021750
I
0.775
TCM_041672
Theobroma cacao
TCM_041672
I
0.706
VIT_08s0007g01920
Vitis vinifera
VIT_08s0007g01920
I
0.733