cassava22122.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava22122.m1 T284075_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KAN1
M00878_2.00 		Arabidopsis thaliana
NNRTNBNN
NNVNAYNN		 PBM
Franco-Zorrilla et al.(2014)
KAN1 		0.909 0.979
KAN1
M02308_2.00 		Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN		 PBM
Weirauch et al.(2014)
pTH7135 		0.909 0.979
KAN2
M07018_2.00 		Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD		 Dap-seq
OMalley et al.(2016)
KAN2_col_a 		0.875 0.979
KAN2
M07019_2.00 		Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN		 Dap-seq
OMalley et al.(2016)
KAN2_colamp_a 		0.875 0.979
KAN4
M00881_2.00 		Arabidopsis thaliana
NWNRTBCNN
NNGVAYNWN		 PBM
Franco-Zorrilla et al.(2014)
KAN4 		0.821 0.936
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.667 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22122.m1 Myb 196 247

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

396 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00011p00262800 Amborella trichopoda AMTR_s00011p00262800 N
Aquca_052_00043 Aquilegia coerulea Aquca_052_00043 N
BRADI1G42040 Brachypodium distachyon BRADI1G42040 N
Bo1g117640 Brassica oleracea Bo1g117640 N
Bra037587 Brassica rapa Bra037587 N
PK03811.1 Cannabis sativa PK03811.1 N
Ciclev10008640m.g Citrus clementina Ciclev10008640m.g N
orange1.1g016887m.g Citrus sinensis orange1.1g016887m.g N
Cucsa.032420 Cucumis sativus Cucsa.032420 N
Eucgr.F01181 Eucalyptus grandis Eucgr.F01181 N
gene27205-v1.0-hybrid Fragaria vesca gene27205-v1.0-hybrid N
GLYMA06G35561 Glycine max GLYMA06G35561 N
GLYMA12G18490 Glycine max GLYMA12G18490 N
Gorai.002G065900 Gossypium raimondii Gorai.002G065900 N
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N
MLOC_61712 Hordeum vulgare MLOC_61712 N
LPERR06G11990 Leersia perrieri LPERR06G11990 N
Lus10013684.g Linum usitatissimum Lus10013684.g N
chr3.CM0282.640.nc Lotus japonicus chr3.CM0282.640.nc N
chr3.CM0282.620.nc Lotus japonicus chr3.CM0282.620.nc N
MDP0000268133 Malus domestica MDP0000268133 N
MDP0000315095 Malus domestica MDP0000315095 N
MTR_8g061040 Medicago truncatula MTR_8g061040 N
mgf014854m Mimulus guttatus mgf014854m N
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N
OBART06G15310 Oryza barthii OBART06G15310 N
BGIOSGA021223 Oryza indica BGIOSGA021223 N
OLONG_009306 Oryza longistaminata OLONG_009306 N
OMERI06G16500 Oryza meridionalis OMERI06G16500 N
OPUNC06G13990 Oryza punctata OPUNC06G13990 N
ORUFI06G16210 Oryza rufipogon ORUFI06G16210 N
OS06G0485100 Oryza sativa OS06G0485100 N
Pavir.Bb01334 Panicum virgatum Pavir.Bb01334 N
Pavir.Ba02980 Panicum virgatum Pavir.Ba02980 N
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N
Pm011344 Prunus mume Pm011344 N
PRUPE_ppa007389mg Prunus persica PRUPE_ppa007389mg N
30209.m001510 Ricinus communis 30209.m001510 N
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N
SapurV1A.0303s0100 Salix purpurea SapurV1A.0303s0100 N
Si030167m.g Setaria italica Si030167m.g N
Solyc10g007130.2 Solanum lycopersicum Solyc10g007130.2 N
Sb02g020940 Sorghum bicolor Sb02g020940 N
TCM_046875 Theobroma cacao TCM_046875 N
Traes_7DS_197A95728 Triticum aestivum Traes_7DS_197A95728 N
TRIUR3_19251 Triticum urartu TRIUR3_19251 N
VIT_19s0014g01880 Vitis vinifera VIT_19s0014g01880 N
GRMZM2G126170 Zea mays GRMZM2G126170 N