Pavir.J36955 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J36955 T299015_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.908 0.583
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.908 0.583
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.908 0.583
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.905 0.583
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36955.1.p NAC/NAM 14 145

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB95 Arabidopsis lyrata fgenesh2_kg.2__1707__AT1G74430.1 N
fgenesh1_pg.C_scaffold_1001692 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001692 N
AtMYB47 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001691 N
MYB95 Arabidopsis thaliana AT1G74430 N
AtMYB47 Arabidopsis thaliana AT1G18710 N
Bostr.7128s0481 Boechera stricta Bostr.7128s0481 N
Bostr.3288s0088 Boechera stricta Bostr.3288s0088 N
Bo2g081100 Brassica oleracea Bo2g081100 N
Bo5g025730 Brassica oleracea Bo5g025730 N
Bo5g025790 Brassica oleracea Bo5g025790 N
Bo6g087030 Brassica oleracea Bo6g087030 N
Bo6g118710 Brassica oleracea Bo6g118710 N
Bo6g118730 Brassica oleracea Bo6g118730 N
Bo8g091080 Brassica oleracea Bo8g091080 N
Bo8g091100 Brassica oleracea Bo8g091100 N
Bra016546 Brassica rapa Bra016546 N
Bra025678 Brassica rapa Bra025678 N
Bra015912 Brassica rapa Bra015912 N
Bra015911 Brassica rapa Bra015911 N
Bra008149 Brassica rapa Bra008149 N
Bra003801 Brassica rapa Bra003801 N
Cagra.4153s0008 Capsella grandiflora Cagra.4153s0008 N
Carubv10010045m.g Capsella rubella Carubv10010045m.g N
Carubv10010086m.g Capsella rubella Carubv10010086m.g N
Carubv10011014m.g Capsella rubella Carubv10011014m.g N
Carubv10020753m.g Capsella rubella Carubv10020753m.g N
Thhalv10008528m.g Eutrema salsugineum Thhalv10008528m.g N
Thhalv10018987m.g Eutrema salsugineum Thhalv10018987m.g N