Alligator_sinensis_CCG020979.1 (Alligator sinensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Alligator_sinensis_CCG020979.1 T306556_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.988 0.914
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.988 0.914
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.977 0.900
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.977 0.900
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.977 0.900
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.977 0.886
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.974 0.886
NR2E3
M00371_2.00 		Homo sapiens
NNNHAATWTRTNN
NNAYAWATTDNNN		 PBM
Barrera et al.(2016)
NR2E3_R76W 		0.969 0.886
NR2E3
M00369_2.00 		Homo sapiens
NGGGRTCAHN
NDTGAYCCCN		 PBM
Barrera et al.(2016)
NR2E3_G56R 		0.964 0.886
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020979.1 Nuclear receptor 33 103

Links

Other Nuclear receptor family TFs
Other Alligator sinensis TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000771 Aedes aegypti AAEL000771 N
ENSAPLG00000003216 Anas platyrhynchos ENSAPLG00000003216 N
ENSAPLG00000010204 Anas platyrhynchos ENSAPLG00000010204 N
ENSAPLG00000013168 Anas platyrhynchos ENSAPLG00000013168 I
ANCCEY_05358 Ancylostoma ceylanicum ANCCEY_05358 N
ANCDUO_13942 Ancylostoma duodenale ANCDUO_13942 N
AALB009772 Anopheles albimanus AALB009772 N
AALB009867 Anopheles albimanus AALB009867 N
AARA000825 Anopheles arabiensis AARA000825 N
AATE015714 Anopheles atroparvus AATE015714 N
AATE016483 Anopheles atroparvus AATE016483 N
ACOM022799 Anopheles coluzzii ACOM022799 N
ACOM026653 Anopheles coluzzii ACOM026653 N
ACUA008827 Anopheles culicifacies ACUA008827 N
ACUA010594 Anopheles culicifacies ACUA010594 N
ACUA012732 Anopheles culicifacies ACUA012732 N
ADIR005631 Anopheles dirus ADIR005631 N
ADIR009661 Anopheles dirus ADIR009661 N
AEPI003629 Anopheles epiroticus AEPI003629 N
AEPI007652 Anopheles epiroticus AEPI007652 N
AEPI007948 Anopheles epiroticus AEPI007948 N
AFUN006689 Anopheles funestus AFUN006689 N
AFUN009317 Anopheles funestus AFUN009317 N
AFUN010198 Anopheles funestus AFUN010198 N
AGAP028091 Anopheles gambiae AGAP028091 N
AMAM004028 Anopheles maculatus AMAM004028 N
AMAM023617 Anopheles maculatus AMAM023617 N
AMEC007393 Anopheles melas AMEC007393 N
AMEC011653 Anopheles melas AMEC011653 N
AMEM002834 Anopheles merus AMEM002834 N
AMEM007694 Anopheles merus AMEM007694 N
AMIN001220 Anopheles minimus AMIN001220 N
AMIN009302 Anopheles minimus AMIN009302 N
AQUA001261 Anopheles quadriannulatus AQUA001261 N
AQUA005880 Anopheles quadriannulatus AQUA005880 N
ASIS001889 Anopheles sinensis ASIS001889 N
ASTEI06131 Anopheles stephensi ASTEI06131 N
ASTEI06408 Anopheles stephensi ASTEI06408 N
GB40963 Apis mellifera GB40963 N
Afo_R012388 Aptenodytes forsteri Afo_R012388 N
Afo_R012670 Aptenodytes forsteri Afo_R012670 N
ALUE_0000245701 Ascaris lumbricoides ALUE_0000245701 N
ALUE_0000639901 Ascaris lumbricoides ALUE_0000639901 N
ENSAMXG00000017231 Astyanax mexicanus ENSAMXG00000017231 I
ACEP10857 Atta cephalotes ACEP10857 N
ACEP25851 Atta cephalotes ACEP25851 N
67303 Aureococcus anophagefferens 67303 N
BGLB010902 Biomphalaria glabrata BGLB010902 N
BGIBMGA003081 Bombyx mori BGIBMGA003081 N
ENSBTAP00000027633-D1 Bos grunniens ENSBTAP00000027633-D1 I
yakG000714 Bos grunniens yakG000714 N
Brh_R004116 Buceros rhinoceros Brh_R004116 N
sox-2 Caenorhabditis elegans WBGene00004949 I
SOX8 Callithrix jacchus ENSCJAG00000002684 I
SOX18 Callithrix jacchus ENSCJAG00000022379 N
Cmyd_10006594 Chelonia mydas Cmyd_10006594 N
ENSCSAG00000016751 Chlorocebus sabaeus ENSCSAG00000016751 N
CLEC006960 Cimex lectularius CLEC006960 N
Cla016375 Citrullus lanatus Cla016375 N
CNM02020 Cryptococcus neoformans CNM02020 N
CpipJ_CPIJ012041 Culex pipiens CpipJ_CPIJ012041 N
CpipJ_CPIJ014017 Culex pipiens CpipJ_CPIJ014017 N
CPIJ012041 Culex quinquefasciatus CPIJ012041 N
CPIJ012498 Culex quinquefasciatus CPIJ012498 N
CPIJ014017 Culex quinquefasciatus CPIJ014017 N
DAPPUDRAFT_113704 Daphnia pulex DAPPUDRAFT_113704 N
SOX18 Dasypus novemcinctus ENSDNOG00000036237 N
SOX12 Dasypus novemcinctus ENSDNOG00000044763 N
YQE_03817 Dendroctonus ponderosae YQE_03817 N
YQE_08562 Dendroctonus ponderosae YQE_08562 N
YQE_13041 Dendroctonus ponderosae YQE_13041 N
DDB_G0287073 Dictyostelium discoideum DDB_G0287073 N
estExt_fgeneshDP_kg.C_1020010 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1020010 N
SOX10 Echinops telfairi ENSETEG00000012633 I
SOX8 Echinops telfairi ENSETEG00000015470 N
SOX9 Echinops telfairi ENSETEG00000020237 I
ECPE_0001383301 Echinostoma caproni ECPE_0001383301 N
UCREL1_237 Eutypa lata UCREL1_237 N
UCREL1_749 Eutypa lata UCREL1_749 N
SOX8 Felis catus ENSFCAG00000004219 N
ENSFCAG00000015685 Felis catus ENSFCAG00000015685 I
SOX2 Felis catus ENSFCAG00000029205 I
GPLIN_000970900 Globodera pallida GPLIN_000970900 N
GLOTRDRAFT_8101 Gloeophyllum trabeum GLOTRDRAFT_8101 N
GLYMA20G01570 Glycine max GLYMA20G01570 N
GPUH_0000499601 Gongylonema pulchrum GPUH_0000499601 N
CMQ_5875 Grosmannia clavigera CMQ_5875 N
HHAL000218-PA Halyomorpha halys HHAL000218-PA N
HHAL001293-PA Halyomorpha halys HHAL001293-PA N
HHAL001583-PA Halyomorpha halys HHAL001583-PA N
Hsal_04827--XP_001122993.1_APIME Harpegnathos saltator Hsal_04827--XP_001122993.1_APIME N
Hsal_05005--XP_001122373.1_APIME Harpegnathos saltator Hsal_05005--XP_001122373.1_APIME N
HMEL013676 Heliconius melpomene HMEL013676 N
HelroG68905 Helobdella robusta HelroG68905 N
Hba_21281 Heterorhabditis bacteriophora Hba_21281 N
HmN_000301900 Hymenolepis microstoma HmN_000301900 N
ISCW001638 Ixodes scapularis ISCW001638 N
K443DRAFT_58201 Laccaria amethystina K443DRAFT_58201 N
LACBIDRAFT_169971 Laccaria bicolor LACBIDRAFT_169971 N
LDEC007550 Leptinotarsa decemlineata LDEC007550 N
LDEC017494 Leptinotarsa decemlineata LDEC017494 N
LDEC018263 Leptinotarsa decemlineata LDEC018263 N
LDEC019307 Leptinotarsa decemlineata LDEC019307 N
LotgiG143673 Lottia gigantea LotgiG143673 N
LCUP001586 Lucilia cuprina LCUP001586 N
ENSP00000409273 Macaca fascicularis ENSP00000409273 I
MESCA006364 Megaselia scalaris MESCA006364 N
MESCA012239 Megaselia scalaris MESCA012239 I
ENSMGAG00000006624 Meleagris gallopavo ENSMGAG00000006624 N
Minc18937 Meloidogyne incognita Minc18937 N
SOX8 Microcebus murinus ENSMICG00000011516 I
MPER_06248 Moniliophthora perniciosa MPER_06248 N
Hmg20b Mus musculus ENSMUSG00000020232 D
Sox17 Mus musculus ENSMUSG00000025902 D
Myotis_brandtii_Hmgb2_10029741 Myotis brandtii Myotis_brandtii_Hmgb2_10029741 N
Myotis_brandtii_TIMM8A_10019481 Myotis brandtii Myotis_brandtii_TIMM8A_10019481 N
SOX9 Myotis lucifugus ENSMLUG00000030312 I
ENSNLEG00000002693 Nomascus leucogenys ENSNLEG00000002693 N
OESDEN_19415 Oesophagostomum dentatum OESDEN_19415 N
Ogr00751 Ophisaurus gracilis Ogr00751 I
Ogr08337 Ophisaurus gracilis Ogr08337 N
Ogr11176 Ophisaurus gracilis Ogr11176 N
Ogr13852 Ophisaurus gracilis Ogr13852 N
ENSOANG00000002448 Ornithorhynchus anatinus ENSOANG00000002448 I
ENSOANG00000011188 Ornithorhynchus anatinus ENSOANG00000011188 I
SOX18 Pan troglodytes ENSPTRG00000030459 I
PEQ_0000549401 Parascaris equorum PEQ_0000549401 N
PHUM433280 Pediculus humanus PHUM433280 N
ENSPMAG00000004519 Petromyzon marinus ENSPMAG00000004519 N
PPAI003639 Phlebotomus papatasi PPAI003639 N
PPAI005428 Phlebotomus papatasi PPAI005428 N
M404DRAFT_787968 Pisolithus tinctorius M404DRAFT_787968 N
PLEOSDRAFT_1017219 Pleurotus ostreatus PLEOSDRAFT_1017219 N
PredSwiss_ASS2010_3779.1 Pneumocystis carinii PredSwiss_ASS2010_3779.1 N
PredSwiss_CON1835.1 Pneumocystis carinii PredSwiss_CON1835.1 N
PODANS_7_7190 Podospora anserina PODANS_7_7190 N
EFA85451.1 Polysphondylium pallidum EFA85451.1 N
POSPLDRAFT_103238 Postia placenta POSPLDRAFT_103238 N
PPA11045 Pristionchus pacificus PPA11045 N
SOX2 Procavia capensis ENSPCAG00000003690 I
SOX18 Procavia capensis ENSPCAG00000015663 N
PXEA_0002992801 Protopolystoma xenopodis PXEA_0002992801 N
GLOINDRAFT_25375 Rhizophagus irregularis GLOINDRAFT_25375 N
GLOINDRAFT_271935 Rhizophagus irregularis GLOINDRAFT_271935 N
GLOINDRAFT_335861 Rhizophagus irregularis GLOINDRAFT_335861 N
GLOINDRAFT_346686 Rhizophagus irregularis GLOINDRAFT_346686 N
GLOINDRAFT_83691 Rhizophagus irregularis GLOINDRAFT_83691 N
RPRC001038 Rhodnius prolixus RPRC001038 N
RPRC013413 Rhodnius prolixus RPRC013413 N
SapurV1A.0237s0190 Salix purpurea SapurV1A.0237s0190 N
ENSSHAG00000008406 Sarcophilus harrisii ENSSHAG00000008406 I
Sjc_0107520 Schistosoma japonicum Sjc_0107520 N
SMU15030186 Schmidtea mediterranea SMU15030186 N
SCLCIDRAFT_59496 Scleroderma citrinum SCLCIDRAFT_59496 N
SINV16572 Solenopsis invicta SINV16572 N
SINV19749 Solenopsis invicta SINV19749 N
SINV24165 Solenopsis invicta SINV24165 N
SOX17 Sorex araneus ENSSARG00000009573 I
M422DRAFT_54734 Sphaerobolus stellatus M422DRAFT_54734 N
SPER_0001708101 Spirometra erinaceieuropaei SPER_0001708101 N
SPER_0001952401 Spirometra erinaceieuropaei SPER_0001952401 N
fgenesh1_pg.C_scaffold_11000031 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000031 N
L898_g4879 Steinernema monticolum L898_g4879 N
SMAR007058 Strigamia maritima SMAR007058 N
SMAR010125 Strigamia maritima SMAR010125 N
ENSTSYG00000001164 Tarsius syrichta ENSTSYG00000001164 I
ENSTSYG00000006321 Tarsius syrichta ENSTSYG00000006321 I
sox9a Tetraodon nigroviridis ENSTNIG00000001901 N
TCNE_0000669501 Toxocara canis TCNE_0000669501 N
TC009856 Tribolium castaneum TC009856 N
TVAG_114290 Trichomonas vaginalis TVAG_114290 N
TVAG_390840 Trichomonas vaginalis TVAG_390840 N
D918_08317 Trichuris suis D918_08317 N
SOX9 Tupaia belangeri ENSTBEG00000000175 N
ENSTTRG00000015548 Tursiops truncatus ENSTTRG00000015548 I
VDBG_04936 Verticillium albo atrum VDBG_04936 N
VDBG_04936 Verticillium alfalfae VDBG_04936 N
WALSEDRAFT_59420 Wallemia sebi WALSEDRAFT_59420 N
L798_00185 Zootermopsis nevadensis L798_00185 N
L798_05432 Zootermopsis nevadensis L798_05432 N
L798_12046 Zootermopsis nevadensis L798_12046 N