CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SOX9
(
Echinops telfairi
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSETEG00000020237
T328005_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SOX9
M03501_2.00
Homo sapiens
DDACAATRV
BYATTGTHH
SELEX
Jolma et al.(2013)
SOX9_1
0.153
1.000
SOX9
M03502_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX9_2
0.153
1.000
SOX9
M03503_2.00
Homo sapiens
ATCAATRTKCAGTGAT
ATCACTGMAYATTGAT
SELEX
Jolma et al.(2013)
SOX9_3
0.153
1.000
SOX9
M03504_2.00
Homo sapiens
ATGAATRTKCAGTCAT
ATGACTGMAYATTCAT
SELEX
Jolma et al.(2013)
SOX9_4
0.153
1.000
SOX9
M03505_2.00
Homo sapiens
RAACAATTKCAGTGTTH
DAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX9_5
0.153
1.000
SOX9
M03506_2.00
Homo sapiens
NATCAATKKYAGTGATN
NATCACTRMMATTGATN
SELEX
Jolma et al.(2013)
SOX9_6
0.153
1.000
SOX9
M03507_2.00
Homo sapiens
NATGAATTKCAGTCATN
NATGACTGMAATTCATN
SELEX
Jolma et al.(2013)
SOX9_7
0.153
1.000
SOX9
M05767_2.00
Homo sapiens
HDAACAATRV
BYATTGTTHD
SELEX
Yin et al.(2017)
SOX9_eDBD_HT-SELEX
0.153
1.000
SOX9
M02716_2.00
Homo sapiens
DAACAATRG
CYATTGTTH
SELEX
Mathelier et al.(2014)
MA0077.1
0.153
1.000
SOX9
M09389_2.00
Homo sapiens
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_HUMAN.H11MO.0.B
0.153
1.000
Sox9
M09399_2.00
Mus musculus
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_MOUSE.H11MO.0.A
0.153
1.000
SOX9
M11304_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_09
0.153
1.000
SOX9
M11305_2.00
Homo sapiens
NNNDAACAATRRNN
NNYYATTGTTHNNN
Transfac
Matys et al.(2006)
V$SOX9_B1
0.153
1.000
SOX9
M11306_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q4
0.153
1.000
SOX9
M11307_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q5
0.153
1.000
SOX9
M05768_2.00
Homo sapiens
NNNACAATRS
SYATTGTNNN
SELEX
Yin et al.(2017)
SOX9_eDBD_Methyl-HT-SELEX
0.153
1.000
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000016440
Sox
1
29
LLNESEKRPFVEEAERLRVQHKKDHPDYK
Links
Other
Sox
family TFs
Other
Echinops telfairi
TFs
187 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SOX10
Echinops telfairi
ENSETEG00000012633
I
0.741
ENSAPLG00000013168
Anas platyrhynchos
ENSAPLG00000013168
I
0.739
ENSFCAG00000015685
Felis catus
ENSFCAG00000015685
I
0.739
SOX9
Myotis lucifugus
ENSMLUG00000030312
I
0.739
ENSSHAG00000008406
Sarcophilus harrisii
ENSSHAG00000008406
I
0.739
SOX9
Tupaia belangeri
ENSTBEG00000000175
N
0.739
ENSP00000409273
Macaca fascicularis
ENSP00000409273
I
0.739
SOX8
Echinops telfairi
ENSETEG00000015470
N
0.735
SOX8
Microcebus murinus
ENSMICG00000011516
I
0.735
ENSTSYG00000006321
Tarsius syrichta
ENSTSYG00000006321
I
0.735
Afo_R012388
Aptenodytes forsteri
Afo_R012388
N
0.735
Cmyd_10006594
Chelonia mydas
Cmyd_10006594
N
0.735
Ogr00751
Ophisaurus gracilis
Ogr00751
I
0.735
ENSAPLG00000003216
Anas platyrhynchos
ENSAPLG00000003216
N
0.732
SOX8
Callithrix jacchus
ENSCJAG00000002684
I
0.732
SOX8
Felis catus
ENSFCAG00000004219
N
0.732
LotgiG143673
Lottia gigantea
LotgiG143673
N
0.721
SMAR007058
Strigamia maritima
SMAR007058
N
0.712
PEQ_0000549401
Parascaris equorum
PEQ_0000549401
N
0.710
ENSTSYG00000001164
Tarsius syrichta
ENSTSYG00000001164
I
0.698
L898_g4879
Steinernema monticolum
L898_g4879
N
0.698
YQE_03817
Dendroctonus ponderosae
YQE_03817
N
0.697
HHAL000218-PA
Halyomorpha halys
HHAL000218-PA
N
0.694
LDEC018263
Leptinotarsa decemlineata
LDEC018263
N
0.694
sox9a
Tetraodon nigroviridis
ENSTNIG00000001901
N
0.686
SOX18
Pan troglodytes
ENSPTRG00000030459
I
0.684
AMAM004028
Anopheles maculatus
AMAM004028
N
0.684
AMEC007393
Anopheles melas
AMEC007393
N
0.684
AMIN001220
Anopheles minimus
AMIN001220
N
0.684
CpipJ_CPIJ014017
Culex pipiens
CpipJ_CPIJ014017
N
0.682
CPIJ014017
Culex quinquefasciatus
CPIJ014017
N
0.682
DAPPUDRAFT_113704
Daphnia pulex
DAPPUDRAFT_113704
N
0.682
AFUN006689
Anopheles funestus
AFUN006689
N
0.682
ENSBTAP00000027633-D1
Bos grunniens
ENSBTAP00000027633-D1
I
0.679
ENSCSAG00000016751
Chlorocebus sabaeus
ENSCSAG00000016751
N
0.677
SOX18
Procavia capensis
ENSPCAG00000015663
N
0.677
SOX17
Sorex araneus
ENSSARG00000009573
I
0.677
ENSAPLG00000010204
Anas platyrhynchos
ENSAPLG00000010204
N
0.671
SOX18
Dasypus novemcinctus
ENSDNOG00000036237
N
0.671
ENSMGAG00000006624
Meleagris gallopavo
ENSMGAG00000006624
N
0.671
Sox17
Mus musculus
ENSMUSG00000025902
D
0.671
Ogr11176
Ophisaurus gracilis
Ogr11176
N
0.671
ENSTTRG00000015548
Tursiops truncatus
ENSTTRG00000015548
I
0.668
HMEL013676
Heliconius melpomene
HMEL013676
N
0.653
ISCW001638
Ixodes scapularis
ISCW001638
N
0.650
CpipJ_CPIJ012041
Culex pipiens
CpipJ_CPIJ012041
N
0.643
BGIBMGA003081
Bombyx mori
BGIBMGA003081
N
0.643
CPIJ012041
Culex quinquefasciatus
CPIJ012041
N
0.643
ENSOANG00000011188
Ornithorhynchus anatinus
ENSOANG00000011188
I
0.643
L798_12046
Zootermopsis nevadensis
L798_12046
N
0.643
CLEC006960
Cimex lectularius
CLEC006960
N
0.643
LDEC017494
Leptinotarsa decemlineata
LDEC017494
N
0.643
AALB009867
Anopheles albimanus
AALB009867
N
0.643
ACOM022799
Anopheles coluzzii
ACOM022799
N
0.643
ACUA010594
Anopheles culicifacies
ACUA010594
N
0.643
AEPI003629
Anopheles epiroticus
AEPI003629
N
0.643
AFUN010198
Anopheles funestus
AFUN010198
N
0.643
AMIN009302
Anopheles minimus
AMIN009302
N
0.643
AQUA001261
Anopheles quadriannulatus
AQUA001261
N
0.643
ALUE_0000245701
Ascaris lumbricoides
ALUE_0000245701
N
0.643
ENSAMXG00000017231
Astyanax mexicanus
ENSAMXG00000017231
I
0.640
ACUA008827
Anopheles culicifacies
ACUA008827
N
0.635
AEPI007652
Anopheles epiroticus
AEPI007652
N
0.635
ALUE_0000639901
Ascaris lumbricoides
ALUE_0000639901
N
0.632
AATE016483
Anopheles atroparvus
AATE016483
N
0.629
BGLB010902
Biomphalaria glabrata
BGLB010902
N
0.610
AAEL000771
Aedes aegypti
AAEL000771
N
0.603
AGAP028091
Anopheles gambiae
AGAP028091
N
0.603
PHUM433280
Pediculus humanus
PHUM433280
N
0.603
SINV16572
Solenopsis invicta
SINV16572
N
0.603
TC009856
Tribolium castaneum
TC009856
N
0.603
ACUA012732
Anopheles culicifacies
ACUA012732
N
0.603
AEPI007948
Anopheles epiroticus
AEPI007948
N
0.603
AFUN009317
Anopheles funestus
AFUN009317
N
0.603
AMAM023617
Anopheles maculatus
AMAM023617
N
0.603
AMEC011653
Anopheles melas
AMEC011653
N
0.603
AMEM002834
Anopheles merus
AMEM002834
N
0.603
ASTEI06131
Anopheles stephensi
ASTEI06131
N
0.603
MPER_06248
Moniliophthora perniciosa
MPER_06248
N
0.586
PK00252.1
Cannabis sativa
PK00252.1
N
0.585
SINV19749
Solenopsis invicta
SINV19749
N
0.582
L798_00185
Zootermopsis nevadensis
L798_00185
N
0.579
PredSwiss_ASS2010_3779.1
Pneumocystis carinii
PredSwiss_ASS2010_3779.1
N
0.579
PredSwiss_CON1835.1
Pneumocystis carinii
PredSwiss_CON1835.1
N
0.579
SOX2
Felis catus
ENSFCAG00000029205
I
0.567
SOX2
Procavia capensis
ENSPCAG00000003690
I
0.567
ADIR005631
Anopheles dirus
ADIR005631
N
0.567
ASTEI06408
Anopheles stephensi
ASTEI06408
N
0.567
WUBG_12101
Wuchereria bancrofti
WUBG_12101
N
0.563
Hmg20b
Mus musculus
ENSMUSG00000020232
D
0.563
ANCDUO_13942
Ancylostoma duodenale
ANCDUO_13942
N
0.554
67303
Aureococcus anophagefferens
67303
N
0.548
AMEM007694
Anopheles merus
AMEM007694
N
0.548
OESDEN_19415
Oesophagostomum dentatum
OESDEN_19415
N
0.548
GPUH_0000499601
Gongylonema pulchrum
GPUH_0000499601
N
0.546
Afo_R012670
Aptenodytes forsteri
Afo_R012670
N
0.540
ENSOANG00000002448
Ornithorhynchus anatinus
ENSOANG00000002448
I
0.539
YQE_08562
Dendroctonus ponderosae
YQE_08562
N
0.538
GLOINDRAFT_335861
Rhizophagus irregularis
GLOINDRAFT_335861
N
0.537
SMAR010125
Strigamia maritima
SMAR010125
N
0.536
HmN_000301900
Hymenolepis microstoma
HmN_000301900
N
0.534
Myotis_brandtii_Hmgb2_10029741
Myotis brandtii
Myotis_brandtii_Hmgb2_10029741
N
0.531
Myotis_brandtii_TIMM8A_10019481
Myotis brandtii
Myotis_brandtii_TIMM8A_10019481
N
0.531
ACEP25851
Atta cephalotes
ACEP25851
N
0.528
HHAL001293-PA
Halyomorpha halys
HHAL001293-PA
N
0.528
AALB009772
Anopheles albimanus
AALB009772
N
0.528
AATE015714
Anopheles atroparvus
AATE015714
N
0.528
ACOM026653
Anopheles coluzzii
ACOM026653
N
0.528
ADIR009661
Anopheles dirus
ADIR009661
N
0.528
AQUA005880
Anopheles quadriannulatus
AQUA005880
N
0.528
ENSNLEG00000002693
Nomascus leucogenys
ENSNLEG00000002693
N
0.525
MESCA006364
Megaselia scalaris
MESCA006364
N
0.525
SOX9
Ochotona princeps
ENSOPRG00000007860
N
0.515
Minc18937
Meloidogyne incognita
Minc18937
N
0.515
DDB_G0287073
Dictyostelium discoideum
DDB_G0287073
N
0.514
M404DRAFT_787968
Pisolithus tinctorius
M404DRAFT_787968
N
0.512
UCREL1_237
Eutypa lata
UCREL1_237
N
0.511
HelroG68905
Helobdella robusta
HelroG68905
N
0.510
Ogr13852
Ophisaurus gracilis
Ogr13852
N
0.510
CpipJ_CPIJ012498
Culex pipiens
CpipJ_CPIJ012498
N
0.509
CPIJ012498
Culex quinquefasciatus
CPIJ012498
N
0.509
YQE_13041
Dendroctonus ponderosae
YQE_13041
N
0.509
ASIS001889
Anopheles sinensis
ASIS001889
N
0.509
estExt_fgeneshDP_kg.C_1020010
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_1020010
N
0.508
HHAL001583-PA
Halyomorpha halys
HHAL001583-PA
N
0.507
PPAI005428
Phlebotomus papatasi
PPAI005428
N
0.506
L798_05432
Zootermopsis nevadensis
L798_05432
N
0.505
ENSPMAG00000004519
Petromyzon marinus
ENSPMAG00000004519
N
0.504
Cla016375
Citrullus lanatus
Cla016375
N
0.503
JL09_g5343
Pichia kudriavzevii
JL09_g5343
N
0.498
Gorai.005G106800
Gossypium raimondii
Gorai.005G106800
N
0.498
RPRC001038
Rhodnius prolixus
RPRC001038
N
0.497
ENSPSIG00000016857
Pelodiscus sinensis
ENSPSIG00000016857
N
0.496
M422DRAFT_54734
Sphaerobolus stellatus
M422DRAFT_54734
N
0.491
TcIL3000.10.440
Trypanosoma congolense
TcIL3000.10.440
N
0.491
ENSFALG00000011068
Ficedula albicollis
ENSFALG00000011068
N
0.489
Aan_R006397
Calypte anna
Aan_R006397
N
0.489
Gfo_R008143
Geospiza fortis
Gfo_R008143
N
0.489
SOX18
Callithrix jacchus
ENSCJAG00000022379
N
0.488
MESCA012239
Megaselia scalaris
MESCA012239
I
0.487
F443_09320
Phytophthora parasitica
F443_09320
N
0.485
Sox6
Dipodomys ordii
ENSDORG00000013073
N
0.483
ENSVPAG00000008729
Vicugna pacos
ENSVPAG00000008729
N
0.483
BBX
Sorex araneus
ENSSARG00000008353
N
0.477
fgenesh_scip_prom.28083.3150
Phytophthora lateralis
fgenesh_scip_prom.28083.3150
N
0.477
Phyra76615
Phytophthora ramorum
Phyra76615
N
0.477
Physo127875
Phytophthora sojae
Physo127875
N
0.477
fgenesh1_pm.C_scaffold_23000166
Phytophthora capsici
fgenesh1_pm.C_scaffold_23000166
N
0.477
TVAG_390840
Trichomonas vaginalis
TVAG_390840
N
0.474
ACEP10857
Atta cephalotes
ACEP10857
N
0.468
GLOINDRAFT_271935
Rhizophagus irregularis
GLOINDRAFT_271935
N
0.465
SINV24165
Solenopsis invicta
SINV24165
N
0.463
WALSEDRAFT_59420
Wallemia sebi
WALSEDRAFT_59420
N
0.458
SOX18
Echinops telfairi
ENSETEG00000001816
N
0.455
ENSPCAG00000014137
Procavia capensis
ENSPCAG00000014137
N
0.455
TCF7L2
Vicugna pacos
ENSVPAG00000008158
N
0.455
SMU15030186
Schmidtea mediterranea
SMU15030186
N
0.455
TCNE_0000669501
Toxocara canis
TCNE_0000669501
N
0.454
sox-2
Caenorhabditis elegans
WBGene00004949
I
0.453
Ogr08337
Ophisaurus gracilis
Ogr08337
N
0.453
LCUP001586
Lucilia cuprina
LCUP001586
N
0.453
Hba_21281
Heterorhabditis bacteriophora
Hba_21281
N
0.453
ECPE_0001383301
Echinostoma caproni
ECPE_0001383301
N
0.447
LEF1
Tursiops truncatus
ENSTTRG00000008109
N
0.445
Hsal_04827--XP_001122993.1_APIME
Harpegnathos saltator
Hsal_04827--XP_001122993.1_APIME
N
0.445
GPLIN_000970900
Globodera pallida
GPLIN_000970900
N
0.445
Brh_R004116
Buceros rhinoceros
Brh_R004116
N
0.443
GLOTRDRAFT_8101
Gloeophyllum trabeum
GLOTRDRAFT_8101
N
0.441
K443DRAFT_58201
Laccaria amethystina
K443DRAFT_58201
N
0.441
LACBIDRAFT_169971
Laccaria bicolor
LACBIDRAFT_169971
N
0.441
PLEOSDRAFT_1017219
Pleurotus ostreatus
PLEOSDRAFT_1017219
N
0.441
SCLCIDRAFT_59496
Scleroderma citrinum
SCLCIDRAFT_59496
N
0.441
TVAG_114290
Trichomonas vaginalis
TVAG_114290
N
0.439
Sjc_0107520
Schistosoma japonicum
Sjc_0107520
N
0.439
PXEA_0002992801
Protopolystoma xenopodis
PXEA_0002992801
N
0.439
VDBG_04936
Verticillium albo atrum
VDBG_04936
N
0.438
VDBG_04936
Verticillium alfalfae
VDBG_04936
N
0.438
EFA85451.1
Polysphondylium pallidum
EFA85451.1
N
0.438
GLYMA20G01570
Glycine max
GLYMA20G01570
N
0.435
LDEC019307
Leptinotarsa decemlineata
LDEC019307
N
0.435
yakG000714
Bos grunniens
yakG000714
N
0.429
Hsal_05005--XP_001122373.1_APIME
Harpegnathos saltator
Hsal_05005--XP_001122373.1_APIME
N
0.428
GLOINDRAFT_83691
Rhizophagus irregularis
GLOINDRAFT_83691
N
0.423
fgenesh1_pg.C_scaffold_11000031
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_11000031
N
0.423
PPA11045
Pristionchus pacificus
PPA11045
N
0.420
ENSGALG00000023601
Gallus gallus
ENSGALG00000023601
N
0.416
SOX9
Callithrix jacchus
ENSCJAG00000000109
I
0.159