ENSAMEG00000010127 (Ailuropoda melanoleuca)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSAMEG00000010127 T311565_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		1.000 1.000
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		1.000 1.000
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		1.000 1.000
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		1.000 1.000
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		1.000 1.000
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		1.000 1.000
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		1.000 1.000
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		1.000 1.000
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		1.000 1.000
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		1.000 1.000
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		1.000 1.000
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		1.000 1.000
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		1.000 1.000
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		1.000 1.000
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		1.000 1.000
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		1.000 1.000
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		1.000 1.000
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		1.000 1.000
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.976 0.976
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.968 0.968
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.936 0.936
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.936 0.936
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.936 0.936
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.936 0.936
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.936 0.936
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.880 0.880
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.880 0.880
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.880 0.880
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.752 0.752
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.752 0.752
Poxn
M03946_2.00 		Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH		 SELEX
Nitta et al.(2015)
Poxn_1 		0.744 0.744
Poxn
M03947_2.00 		Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY		 SELEX
Nitta et al.(2015)
Poxn_2 		0.744 0.744
Poxn
M03948_2.00 		Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN		 SELEX
Nitta et al.(2015)
Poxn_3 		0.744 0.744
Poxn
M06437_2.00 		Drosophila melanogaster
RSCGTGACG
CGTCACGSY		 B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130 		0.744 0.744
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.736 0.736
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.736 0.736
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.736 0.736
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.736 0.736
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.736 0.736
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.736 0.736
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.736 0.736
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.736 0.736
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.736 0.736
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.736 0.736
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.736 0.736
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.728 0.728
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.728 0.728
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMEP00000010645 Paired box 16 140
ENSAMEP00000010649 Paired box 4 128

Links

Other Paired box family TFs
Other Ailuropoda melanoleuca TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D
GT-1 Arabidopsis lyrata scaffold_101505.1 D
GT-4 Arabidopsis thaliana AT3G25990 D
GT-1 Arabidopsis thaliana AT1G13450 D
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I
Bo8g107400 Brassica oleracea Bo8g107400 I
Bo5g017510 Brassica oleracea Bo5g017510 I
Bo2g138840 Brassica oleracea Bo2g138840 I
Bra019721 Brassica rapa Bra019721 I
Bra026903 Brassica rapa Bra026903 I
Bra036354 Brassica rapa Bra036354 I
PK20543.1 Cannabis sativa PK20543.1 D
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I
Carubv10009313m.g Capsella rubella Carubv10009313m.g I
Carubv10017413m.g Capsella rubella Carubv10017413m.g I
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I
Ca_11315 Cicer arietinum Ca_11315 I
Cla023054 Citrullus lanatus Cla023054 I
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I
Cucsa.394820 Cucumis sativus Cucsa.394820 I
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I
GLYMA11G37390 Glycine max GLYMA11G37390 D
GLYMA18G01360 Glycine max GLYMA18G01360 I
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I
MLOC_64014 Hordeum vulgare MLOC_64014 I
Lus10015824.g Linum usitatissimum Lus10015824.g I
Lus10036978.g Linum usitatissimum Lus10036978.g I
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I
MDP0000164819 Malus domestica MDP0000164819 D
MDP0000275412 Malus domestica MDP0000275412 I
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I
MTR_3g085960 Medicago truncatula MTR_3g085960 D
mgf016368m Mimulus guttatus mgf016368m I
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I
OB04G23970 Oryza brachyantha OB04G23970 I
OS04G0486400 Oryza sativa OS04G0486400 D
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I
Pm016214 Prunus mume Pm016214 I
Pm006885 Prunus mume Pm006885 I
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I
29929.m004704 Ricinus communis 29929.m004704 D
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I
Si036121m.g Setaria italica Si036121m.g I
Si010147m.g Setaria italica Si010147m.g I
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I
TCM_010751 Theobroma cacao TCM_010751 I
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D
GRMZM2G047370 Zea mays GRMZM2G047370 I