TC003627 (Tribolium castaneum)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 TC003627 T314253_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bab1
M06440_2.00 		Drosophila melanogaster
AAYAWWWATA
TATWAWTRTT		 B1H
Zhu et al.(2011)
bab1_FlyReg_FBgn0004870 		1.000 1.000
bab1
M06441_2.00 		Drosophila melanogaster
KAATTAWATAW
WTATWTAATTM		 B1H
Zhu et al.(2011)
bab1_SANGER_5_FBgn0004870 		1.000 1.000
bab1
M09690_2.00 		Drosophila melanogaster
AHWAYWATAWAHAT
ATDTWTATWRTWDT		 Misc
Kulakovskiy et al.(2009)
bab1 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TC003627-PA Pipsqueak 50 95

Links

Other Pipsqueak family TFs
Other Tribolium castaneum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
MYB118 Arabidopsis thaliana AT3G27785 D 0.000
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.000
Bo2g144970 Brassica oleracea Bo2g144970 I 0.000
Bra025299 Brassica rapa Bra025299 I 0.000
Bra033027 Brassica rapa Bra033027 I 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.000
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.000
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Cla010586 Citrullus lanatus Cla010586 I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.000
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
MDP0000199939 Malus domestica MDP0000199939 I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.000
mgf024290m Mimulus guttatus mgf024290m I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
Pm015681 Prunus mume Pm015681 I 0.000
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
29917.m001977 Ricinus communis 29917.m001977 I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
TCM_016909 Theobroma cacao TCM_016909 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000