CPIJ006373 (Culex quinquefasciatus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 CPIJ006373 T319317_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.825 0.825
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.825 0.825
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.825 0.825
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.825 0.825
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.725 0.725
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.725 0.725
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.725 0.725
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.725 0.725
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.725 0.725
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.725 0.725
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.725 0.725
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.725 0.725
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.725 0.725
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.725 0.725
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.725 0.725
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.725 0.725
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.700 0.700
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.700 0.700
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.700 0.700
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.700 0.700
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.700 0.700
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.700 0.700
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.700 0.700
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.700 0.700
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.700 0.700
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.700 0.700
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.700 0.700
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.700 0.700
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.700 0.700
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.700 0.700
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.700 0.700
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.700 0.700
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.700 0.700
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.700 0.700
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.700 0.700
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.700 0.700
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.700 0.700
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.700 0.700
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.700 0.700
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.700 0.700
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPIJ006373-PA Runt 18 57

Links

Other Runt family TFs
Other Culex quinquefasciatus TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.750
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.850
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.737
AALB007752 Anopheles albimanus AALB007752 I 0.825
AARA011472 Anopheles arabiensis AARA011472 I 0.700
ACOM031089 Anopheles coluzzii ACOM031089 I 0.700
ACUA008762 Anopheles culicifacies ACUA008762 I 0.717
ADIR002676 Anopheles dirus ADIR002676 I 0.825
AFAF013225 Anopheles farauti AFAF013225 I 0.825
AGAP001094 Anopheles gambiae AGAP001094 I 0.700
AMAM011616 Anopheles maculatus AMAM011616 I 0.920
AMEC007551 Anopheles melas AMEC007551 I 0.700
AMEM004753 Anopheles merus AMEM004753 I 0.700
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.700
AQUA009446 Anopheles quadriannulatus AQUA009446 I 0.920
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.725
ACEP16410 Atta cephalotes ACEP16410 I 0.725
ACEP16406 Atta cephalotes ACEP16406 I 0.825
ACEP16400 Atta cephalotes ACEP16400 I 0.857
ACEP16394 Atta cephalotes ACEP16394 I 0.714
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.750
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.825
CLEC011126 Cimex lectularius CLEC011126 N 0.775
CLEC011124 Cimex lectularius CLEC011124 I 0.875
CpipJ_CPIJ006373 Culex pipiens CpipJ_CPIJ006373 I 1.000
CpipJ_CPIJ016825 Culex pipiens CpipJ_CPIJ016825 I 0.756
CPIJ016825 Culex quinquefasciatus CPIJ016825 I 0.756
KGM_21065 Danaus plexippus KGM_21065 I 0.800
KGM_21067 Danaus plexippus KGM_21067 I 0.725
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.737
runx2b Danio rerio ENSDARG00000059233 I 0.744
runx2a Danio rerio ENSDARG00000040261 I 0.725
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.700
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.725
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.725
Gfo_R013848 Geospiza fortis Gfo_R013848 I 0.737
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.825
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.750
HMEL009842 Heliconius melpomene HMEL009842 I 0.923
HMEL014739 Heliconius melpomene HMEL014739 I 0.800
RUNX2 Homo sapiens ENSG00000124813 D 0.725
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.725
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.725
LCUP002656 Lucilia cuprina LCUP002656 I 0.762
LCUP002647 Lucilia cuprina LCUP002647 I 0.744
MESCA007078 Megaselia scalaris MESCA007078 I 0.838
ENSMGAG00000002035 Meleagris gallopavo ENSMGAG00000002035 I 0.737
MCINX000302 Melitaea cinxia MCINX000302 I 0.750
MCINX000297 Melitaea cinxia MCINX000297 N 0.710
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.700
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.700
Runx1 Mus musculus ENSMUSG00000022952 D 0.700
Runx2 Mus musculus ENSMUSG00000039153 D 0.725
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 0.700
PHUM333310 Pediculus humanus PHUM333310 I 0.700
PPAI007797 Phlebotomus papatasi PPAI007797 I 0.900
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.833
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.700
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.700
RPRC005391 Rhodnius prolixus RPRC005391 I 0.800
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.700
SINV13405 Solenopsis invicta SINV13405 I 0.767
SINV13317 Solenopsis invicta SINV13317 I 0.825
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.700
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.725
TC006536 Tribolium castaneum TC006536 I 0.800
TC006542 Tribolium castaneum TC006542 I 0.700
EFV53501 Trichinella spiralis EFV53501 N 0.722
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.700
XP_002939387 Xenopus tropicalis XP_002939387 I 0.700
XP_002939386 Xenopus tropicalis XP_002939386 I 0.700