Cucsa.349620 (Cucumis sativus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cucsa.349620 T323268_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.958 0.787
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.910 0.760
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.896 0.747
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.886 0.680
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.886 0.680
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.886 0.680
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.349620.1 SBP 50 124

Links

Other SBP family TFs
Other Cucumis sativus TFs

306 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00006p00259200 Amborella trichopoda AMTR_s00006p00259200 I
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I
AtbZIP3 Arabidopsis lyrata fgenesh2_kg.6__1562__AT5G15830.1 I
ATBZIP42 Arabidopsis thaliana AT3G30530 D
Bostr.2902s0318 Boechera stricta Bostr.2902s0318 I
BRADI3G56290 Brachypodium distachyon BRADI3G56290 I
BRADI4G32920 Brachypodium distachyon BRADI4G32920 I
Bo2g012800 Brassica oleracea Bo2g012800 I
Bo3g010620 Brassica oleracea Bo3g010620 I
Bo3g010750 Brassica oleracea Bo3g010750 I
Bo9g163740 Brassica oleracea Bo9g163740 I
Bra006324 Brassica rapa Bra006324 I
Bra008670 Brassica rapa Bra008670 I
Bra023540 Brassica rapa Bra023540 I
PK07533.1 Cannabis sativa PK07533.1 I
Cagra.6845s0027 Capsella grandiflora Cagra.6845s0027 I
Carubv10002068m.g Capsella rubella Carubv10002068m.g I
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
Ca_09362 Cicer arietinum Ca_09362 I
Ca_17416 Cicer arietinum Ca_17416 I
Cla005975 Citrullus lanatus Cla005975 I
Cla016748 Citrullus lanatus Cla016748 I
Cla016841 Citrullus lanatus Cla016841 I
Cla020641 Citrullus lanatus Cla020641 I
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I
Ciclev10032777m.g Citrus clementina Ciclev10032777m.g I
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I
orange1.1g043159m.g Citrus sinensis orange1.1g043159m.g I
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I
Cucsa.109420 Cucumis sativus Cucsa.109420 I
Cucsa.174700 Cucumis sativus Cucsa.174700 I
Cucsa.238410 Cucumis sativus Cucsa.238410 I
Cucsa.284240 Cucumis sativus Cucsa.284240 I
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I
Eucgr.I02090 Eucalyptus grandis Eucgr.I02090 I
Thhalv10015835m.g Eutrema salsugineum Thhalv10015835m.g I
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
GLYMA01G09510 Glycine max GLYMA01G09510 I
GLYMA01G40370 Glycine max GLYMA01G40370 I
GLYMA02G13960 Glycine max GLYMA02G13960 I
GLYMA11G04920 Glycine max GLYMA11G04920 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
GLYMA17G17100 Glycine max GLYMA17G17100 I
GLYMA19G05050 Glycine max GLYMA19G05050 I
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I
MLOC_62430 Hordeum vulgare MLOC_62430 I
LPERR08G15570 Leersia perrieri LPERR08G15570 I
LPERR09G10020 Leersia perrieri LPERR09G10020 I
Lus10013059.g Linum usitatissimum Lus10013059.g I
Lus10029101.g Linum usitatissimum Lus10029101.g I
chr2.CM0124.640.nd Lotus japonicus chr2.CM0124.640.nd I
MDP0000183562 Malus domestica MDP0000183562 I
MDP0000205823 Malus domestica MDP0000205823 I
MDP0000239026 Malus domestica MDP0000239026 I
MDP0000738631 Malus domestica MDP0000738631 I
MDP0000863909 Malus domestica MDP0000863909 I
MDP0000891108 Malus domestica MDP0000891108 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava32522.m1 Manihot esculenta cassava32522.m1 I
cassava41140.m1 Manihot esculenta cassava41140.m1 I
cassava46237.m1 Manihot esculenta cassava46237.m1 I
cassava9577.m1 Manihot esculenta cassava9577.m1 I
MTR_5g015090 Medicago truncatula MTR_5g015090 I
MTR_7g029400 Medicago truncatula MTR_7g029400 I
mgf017392m Mimulus guttatus mgf017392m I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
GSMUA_Achr5G05350_001 Musa acuminata GSMUA_Achr5G05350_001 I
GSMUA_Achr6G36230_001 Musa acuminata GSMUA_Achr6G36230_001 I
OBART02G31030 Oryza barthii OBART02G31030 I
OBART08G18720 Oryza barthii OBART08G18720 I
OBART09G13750 Oryza barthii OBART09G13750 I
OBART09G13760 Oryza barthii OBART09G13760 I
OB09G20300 Oryza brachyantha OB09G20300 I
ORGLA02G0265300 Oryza glaberrima ORGLA02G0265300 I
ORGLA08G0162900 Oryza glaberrima ORGLA08G0162900 I
ORGLA09G0104900 Oryza glaberrima ORGLA09G0104900 I
OGLUM02G31690 Oryza glumaepatula OGLUM02G31690 I
OGLUM08G19690 Oryza glumaepatula OGLUM08G19690 I
OGLUM09G14340 Oryza glumaepatula OGLUM09G14340 I
BGIOSGA008968 Oryza indica BGIOSGA008968 I
BGIOSGA026766 Oryza indica BGIOSGA026766 I
BGIOSGA029595 Oryza indica BGIOSGA029595 I
OLONG_004835 Oryza longistaminata OLONG_004835 I
OLONG_013604 Oryza longistaminata OLONG_013604 I
OMERI02G29910 Oryza meridionalis OMERI02G29910 I
OMERI08G14760 Oryza meridionalis OMERI08G14760 I
ONIVA02G34180 Oryza nivara ONIVA02G34180 I
ONIVA08G20730 Oryza nivara ONIVA08G20730 I
ONIVA09G14270 Oryza nivara ONIVA09G14270 I
OPUNC02G28720 Oryza punctata OPUNC02G28720 I
OPUNC09G12140 Oryza punctata OPUNC09G12140 I
OPUNC09G12240 Oryza punctata OPUNC09G12240 I
ORUFI02G32700 Oryza rufipogon ORUFI02G32700 I
ORUFI08G08020 Oryza rufipogon ORUFI08G08020 I
ORUFI09G14730 Oryza rufipogon ORUFI09G14730 I
OS02G0728001 Oryza sativa OS02G0728001 D
OS08G0487100 Oryza sativa OS08G0487100 I
OS09G0474000 Oryza sativa OS09G0474000 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I
POPTR_0008s11260 Populus trichocarpa POPTR_0008s11260 I
POPTR_0010s14530 Populus trichocarpa POPTR_0010s14530 I
Pm002353 Prunus mume Pm002353 I
Pm015434 Prunus mume Pm015434 I
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I
PRUPE_ppa011644mg Prunus persica PRUPE_ppa011644mg I
30131.m007078 Ricinus communis 30131.m007078 I
30138.m003866 Ricinus communis 30138.m003866 I
SapurV1A.0060s0610 Salix purpurea SapurV1A.0060s0610 I
SapurV1A.0084s0340 Salix purpurea SapurV1A.0084s0340 I
Si019897m.g Setaria italica Si019897m.g I
Si031238m.g Setaria italica Si031238m.g I
Solyc03g046440.1 Solanum lycopersicum Solyc03g046440.1 I
Solyc04g005170.1 Solanum lycopersicum Solyc04g005170.1 I
PGSC0003DMG400001916 Solanum tuberosum PGSC0003DMG400001916 I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
TCM_000835 Theobroma cacao TCM_000835 I
Traes_6AL_E0ED0DE45 Triticum aestivum Traes_6AL_E0ED0DE45 I
Traes_6DL_77ACE1279 Triticum aestivum Traes_6DL_77ACE1279 I
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I
GRMZM2G020799 Zea mays GRMZM2G020799 I
GRMZM2G144480 Zea mays GRMZM2G144480 I