CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSECAG00000006516 *(Equus caballus)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	ENSECAG00000006516	T327940_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Sox3 M00827_2.00	Mus musculus	WDTVHNNN	NNNDBAHW	PBM Weirauch et al.(2013) pTH3087	0.478	1.000
Sox3 M03538_2.00	Mus musculus	RAACAATRNYATTGTTK	MAACAATRNYATTGTTY	SELEX Jolma et al.(2013) Sox3_1	0.478	1.000
Sox3 M03539_2.00	Mus musculus	BATCAATGBYATTGATD	HATCAATRVCATTGATV	SELEX Jolma et al.(2013) Sox3_2	0.478	1.000
Sox3 M03540_2.00	Mus musculus	DATGAATKNYATTCATR	YATGAATRNMATTCATH	SELEX Jolma et al.(2013) Sox3_3	0.478	1.000
SOX3 M05769_2.00	Homo sapiens	VYATTKTNVS	SBNAMAATRB	SELEX Yin et al.(2017) SOX3_FL_HT-SELEX	0.478	1.000
Sox3 M08168_2.00	Mus musculus	CCTTTGTYYB	VRRACAAAGG	ChIP-seq Mathelier et al.(2014) MA0514.1	0.478	1.000
SOX3 M09391_2.00	Homo sapiens	BYCWTTGTBYB	VRVACAAWGRV	Misc Kulakovskiy et al.(2013) SOX3_HUMAN.H11MO.0.B	0.478	1.000
Sox3 M09405_2.00	Mus musculus	VRVACAAWGGV	BCCWTTGTBYB	Misc Kulakovskiy et al.(2013) SOX3_MOUSE.H11MO.0.C	0.478	1.000
Sox3 M09639_2.00	Mus musculus	VACAAWRG	CYWTTGTB	Misc Heinz et al.(2010) NPC-Sox3_GSE33059	0.478	1.000
SOX3 M05770_2.00	Homo sapiens	BYATTGTBNN	NNVACAATRV	SELEX Yin et al.(2017) SOX3_FL_Methyl-HT-SELEX	0.478	1.000
SoxN M03976_2.00	Drosophila melanogaster	VYGHACARTNN	NNAYTGTDCRB	SELEX Nitta et al.(2015) SoxN_1	0.466	0.873
SoxN M03977_2.00	Drosophila melanogaster	NCAATNVCATTGN	NCAATGBNATTGN	SELEX Nitta et al.(2015) SoxN_2	0.466	0.873
Sox21 M00208_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox21_3417	0.450	0.909
Sox21a M03978_2.00	Drosophila melanogaster	NMACAMTAVCATTGTKN	NMACAATGBTAKTGTKN	SELEX Nitta et al.(2015) Sox21a_1	0.446	0.873
Sox21a M03979_2.00	Drosophila melanogaster	NNACAMTANCATTGTYH	DRACAATGNTAKTGTNN	SELEX Nitta et al.(2015) Sox21a_2	0.446	0.873
Sox14 M00829_2.00	Mus musculus	NAACAATD	HATTGTTN	PBM Weirauch et al.(2013) pTH2677	0.444	0.891
Sox14 M00206_2.00	Mus musculus	NNNABAAW	WTTVTNNN	PBM Badis et al.(2009) Sox14_2677	0.444	0.891
SOX14 M03513_2.00	Homo sapiens	ACAMTAMCATTG	CAATGKTAKTGT	SELEX Jolma et al.(2013) SOX14_1	0.444	0.891
SOX14 M03514_2.00	Homo sapiens	NTGAATANCATTCAN	NTGAATGNTATTCAN	SELEX Jolma et al.(2013) SOX14_2	0.444	0.891
SOX14 M03515_2.00	Homo sapiens	TCAATWVCATTGA	TCAATGBWATTGA	SELEX Jolma et al.(2013) SOX14_3	0.444	0.891
SOX2 M03519_2.00	Homo sapiens	DAACAATGKYAKTGTTN	NAACAMTRMCATTGTTH	SELEX Jolma et al.(2013) SOX2_1	0.444	0.891
SOX2 M03520_2.00	Homo sapiens	VTGAATGDYATTCAN	NTGAATRHCATTCAB	SELEX Jolma et al.(2013) SOX2_2	0.444	0.891
SOX2 M03521_2.00	Homo sapiens	NATCAATGNYATTGAWD	HWTCAATRNCATTGATN	SELEX Jolma et al.(2013) SOX2_3	0.444	0.891
SOX2 M03522_2.00	Homo sapiens	NAACAATANCATTGTTH	DAACAATGNTATTGTTN	SELEX Jolma et al.(2013) SOX2_4	0.444	0.891
SOX2 M03523_2.00	Homo sapiens	HATCAATANCATTGATH	DATCAATGNTATTGATD	SELEX Jolma et al.(2013) SOX2_5	0.444	0.891
SOX2 M03524_2.00	Homo sapiens	DTGAATWNCATTCAH	DTGAATGNWATTCAH	SELEX Jolma et al.(2013) SOX2_6	0.444	0.891
SOX14 M05783_2.00	Homo sapiens	NYATTGWNNN	NNNWCAATRN	SELEX Yin et al.(2017) SOX14_eDBD_HT-SELEX	0.444	0.891
SOX14 M05785_2.00	Homo sapiens	NCGAACAATK	MATTGTTCGN	SELEX Yin et al.(2017) SOX14_FL_HT-SELEX	0.444	0.891
SOX2 M05897_2.00	Homo sapiens	NACAAWRRNN	NNYYWTTGTN	SMiLE-seq Isakova et al.(2017) SOX2	0.444	0.891
Sox2 M08170_2.00	Mus musculus	CCWTTGTB	VACAAWGG	ChIP-seq Mathelier et al.(2014) MA0143.3	0.444	0.891
Sox2 M08041_2.00	Mus musculus	WHWRMADNACAAWRR	YYWTTGTNHTKYWDW	ChIP-seq Chen et al.(2011) SRP000217_Sox2	0.444	0.891
Sox2 M08042_2.00	Mus musculus	TTWRCATNWSAAWRV	BYWTTSWNATGYWAA	ChIP-seq Chen et al.(2011) SRP000712_Sox2	0.444	0.891
SOX2 M09397_2.00	Homo sapiens	BBYYWTTGTBYBB	VVRVACAAWRRVV	Misc Kulakovskiy et al.(2013) SOX2_HUMAN.H11MO.0.A	0.444	0.891
Sox2 M09409_2.00	Mus musculus	THWRCATNACAAWRRV	BYYWTTGTNATGYWDA	Misc Kulakovskiy et al.(2013) SOX2_MOUSE.H11MO.0.A	0.444	0.891
SOX2 M11327_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3_01	0.444	0.891
SOX2 M11328_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3	0.444	0.891
SOX2 M11329_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q4	0.444	0.891
SOX2 M11330_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q6	0.444	0.891
SOX14 M05784_2.00	Homo sapiens	NYATTGTNNN	NNNACAATRN	SELEX Yin et al.(2017) SOX14_eDBD_Methyl-HT-SELEX	0.444	0.891
SOX14 M05786_2.00	Homo sapiens	NATTGTTYGB	VCRAACAATN	SELEX Yin et al.(2017) SOX14_FL_Methyl-HT-SELEX	0.444	0.891
Sox1 M00214_2.00	Mus musculus	NNNNNWBAAW	WTTVWNNNNN	PBM Badis et al.(2009) Sox1_2631	0.444	0.873
Sox1 M03542_2.00	Mus musculus	VACAATWNCATTGTT	AACAATGNWATTGTB	SELEX Jolma et al.(2013) Sox1_1	0.444	0.873
Sox1 M03543_2.00	Mus musculus	NTGAATWNCATTCAN	NTGAATGNWATTCAN	SELEX Jolma et al.(2013) Sox1_2	0.444	0.873
Sox1 M03544_2.00	Mus musculus	TCAATWNCATTGA	TCAATGNWATTGA	SELEX Jolma et al.(2013) Sox1_3	0.444	0.873
Sox1 M03545_2.00	Mus musculus	TGAATDDNHATTCA	TGAATDNHHATTCA	SELEX Jolma et al.(2013) Sox1_4	0.444	0.873
SOX21 M03497_2.00	Homo sapiens	AACAATKKYAKTGTT	AACAMTRMMATTGTT	SELEX Jolma et al.(2013) SOX21_1	0.422	0.891
SOX21 M03498_2.00	Homo sapiens	AACAATRKDYAKTGTT	AACAMTRHMYATTGTT	SELEX Jolma et al.(2013) SOX21_2	0.422	0.891
SOX21 M03499_2.00	Homo sapiens	TCAATGDYAKTGA	TCAMTRHCATTGA	SELEX Jolma et al.(2013) SOX21_3	0.422	0.891
SOX21 M03500_2.00	Homo sapiens	TGAATGKYAKTCA	TGAMTRMCATTCA	SELEX Jolma et al.(2013) SOX21_4	0.422	0.891
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSECAP00000004580	Sox	1	55	MVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMK

Links
Other Sox family TFs
Other *Equus caballus* TFs

579 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aquca_038_00045	Aquilegia coerulea	Aquca_038_00045	N	0.000
scaffold_200168.1	Arabidopsis lyrata	scaffold_200168.1	N	0.000
AT1G63490	Arabidopsis thaliana	AT1G63490	N	0.000
Bo9g029100	Brassica oleracea	Bo9g029100	N	0.000
PK05702.1	Cannabis sativa	PK05702.1	N	0.000
Cagra.2104s0024	Capsella grandiflora	Cagra.2104s0024	N	0.000
Cla011637	Citrullus lanatus	Cla011637	N	0.000
orange1.1g000212m.g	Citrus sinensis	orange1.1g000212m.g	N	0.000
Eucgr.D01851	Eucalyptus grandis	Eucgr.D01851	N	0.000
Thhalv10023217m.g	Eutrema salsugineum	Thhalv10023217m.g	N	0.000
GLYMA11G02580	Glycine max	GLYMA11G02580	N	0.000
GLYMA01G42890	Glycine max	GLYMA01G42890	N	0.000
Gorai.004G211700	Gossypium raimondii	Gorai.004G211700	N	0.000
LPERR06G23820	Leersia perrieri	LPERR06G23820	N	0.000
Lus10008495.g	Linum usitatissimum	Lus10008495.g	N	0.000
chr2.CM0304.950.nc	Lotus japonicus	chr2.CM0304.950.nc	N	0.000
cassava14944.m1	Manihot esculenta	cassava14944.m1	N	0.000
MTR_5g010300	Medicago truncatula	MTR_5g010300	N	0.000
mgf018831m	Mimulus guttatus	mgf018831m	N	0.000
OBART06G28370	Oryza barthii	OBART06G28370	N	0.000
OB06G36110	Oryza brachyantha	OB06G36110	N	0.000
ORGLA06G0289500	Oryza glaberrima	ORGLA06G0289500	N	0.000
OGLUM06G29760	Oryza glumaepatula	OGLUM06G29760	N	0.000
BGIOSGA020494	Oryza indica	BGIOSGA020494	N	0.000
OLONG_013925	Oryza longistaminata	OLONG_013925	N	0.000
OMERI06G28260	Oryza meridionalis	OMERI06G28260	N	0.000
ONIVA06G31490	Oryza nivara	ONIVA06G31490	N	0.000
OPUNC06G25880	Oryza punctata	OPUNC06G25880	N	0.000
ORUFI06G30290	Oryza rufipogon	ORUFI06G30290	N	0.000
OS06G0731600	Oryza sativa	OS06G0731600	N	0.000
Pavir.Ib01650	Panicum virgatum	Pavir.Ib01650	N	0.000
PDK_20s1401711g002	Phoenix dactylifera	PDK_20s1401711g002	N	0.000
30190.m011218	Ricinus communis	30190.m011218	N	0.000
Si005667m.g	Setaria italica	Si005667m.g	N	0.000
Solyc08g081000.2	Solanum lycopersicum	Solyc08g081000.2	N	0.000
Sb10g031260	Sorghum bicolor	Sb10g031260	N	0.000
TCM_016246	Theobroma cacao	TCM_016246	N	0.000
GRMZM2G466292	Zea mays	GRMZM2G466292	N	0.000

ENSECAG00000006516 (Equus caballus) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

579 Related TFs

ENSECAG00000006516 **(Equus caballus)
Sox**