PILCRDRAFT_818026 (Piloderma croceum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PILCRDRAFT_818026 T332024_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.419 0.319
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIM84462 Sox 95 164

Links

Other Sox family TFs
Other Piloderma croceum TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_09823 Aegilops tauschii F775_09823 I
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N
AT1G14600 Arabidopsis thaliana AT1G14600 D
AT5G06800 Arabidopsis thaliana AT5G06800 N
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N
BRADI1G28920 Brachypodium distachyon BRADI1G28920 I
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I
Bo2g007410 Brassica oleracea Bo2g007410 N
Bo3g004040 Brassica oleracea Bo3g004040 N
Bo5g019810 Brassica oleracea Bo5g019810 I
Bo9g175820 Brassica oleracea Bo9g175820 I
Bra005912 Brassica rapa Bra005912 N
Bra009228 Brassica rapa Bra009228 I
Bra026202 Brassica rapa Bra026202 I
Bra028717 Brassica rapa Bra028717 N
PK00827.1 Cannabis sativa PK00827.1 N
PK01823.1 Cannabis sativa PK01823.1 I
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N
Carubv10003217m.g Capsella rubella Carubv10003217m.g N
Carubv10010057m.g Capsella rubella Carubv10010057m.g I
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N
Ca_14198 Cicer arietinum Ca_14198 N
Cla011853 Citrullus lanatus Cla011853 N
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N
Cucsa.353890 Cucumis sativus Cucsa.353890 N
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N
gene05518-v1.0-hybrid Fragaria vesca gene05518-v1.0-hybrid I
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N
GLYMA02G30800 Glycine max GLYMA02G30800 N
GLYMA03G29940 Glycine max GLYMA03G29940 I
GLYMA09G17404 Glycine max GLYMA09G17404 N
GLYMA19G32850 Glycine max GLYMA19G32850 I
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N
MLOC_52271 Hordeum vulgare MLOC_52271 I
MLOC_60198 Hordeum vulgare MLOC_60198 I
LPERR04G24240 Leersia perrieri LPERR04G24240 I
LPERR07G10540 Leersia perrieri LPERR07G10540 I
Lus10021035.g Linum usitatissimum Lus10021035.g N
Lus10022885.g Linum usitatissimum Lus10022885.g I
Lus10023816.g Linum usitatissimum Lus10023816.g N
Lus10035705.g Linum usitatissimum Lus10035705.g I
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I
MDP0000184307 Malus domestica MDP0000184307 N
MDP0000253656 Malus domestica MDP0000253656 N
MDP0000280005 Malus domestica MDP0000280005 N
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N
cassava16780.m1 Manihot esculenta cassava16780.m1 I
cassava35979.valid.m1 Manihot esculenta cassava35979.valid.m1 I
cassava35980.valid.m1 Manihot esculenta cassava35980.valid.m1 I
cassava39270.m1 Manihot esculenta cassava39270.m1 I
cassava39743.m1 Manihot esculenta cassava39743.m1 N
MTR_1g053835 Medicago truncatula MTR_1g053835 N
MTR_7g093030 Medicago truncatula MTR_7g093030 N
mgf017208m Mimulus guttatus mgf017208m N
GSMUA_Achr10G23260_001 Musa acuminata GSMUA_Achr10G23260_001 I
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I
OBART04G28680 Oryza barthii OBART04G28680 I
OBART07G12530 Oryza barthii OBART07G12530 I
OB04G35670 Oryza brachyantha OB04G35670 I
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I
ORGLA07G0105500 Oryza glaberrima ORGLA07G0105500 I
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I
OGLUM07G11980 Oryza glumaepatula OGLUM07G11980 I
BGIOSGA014151 Oryza indica BGIOSGA014151 I
PHR2 Oryza indica BGIOSGA025605 I
OLONG_005000 Oryza longistaminata OLONG_005000 I
OLONG_021629 Oryza longistaminata OLONG_021629 I
OMERI04G24260 Oryza meridionalis OMERI04G24260 I
OMERI07G09960 Oryza meridionalis OMERI07G09960 I
ONIVA04G27220 Oryza nivara ONIVA04G27220 I
ONIVA07G10340 Oryza nivara ONIVA07G10340 I
OPUNC04G26200 Oryza punctata OPUNC04G26200 I
OPUNC07G11150 Oryza punctata OPUNC07G11150 I
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I
ORUFI07G12650 Oryza rufipogon ORUFI07G12650 I
OS04G0665600 Oryza sativa OS04G0665600 I
PHR2 Oryza sativa OS07G0438800 I
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I
Pavir.J05593 Panicum virgatum Pavir.J05593 I
PDK_20s1523411g004 Phoenix dactylifera PDK_20s1523411g004 I
estExt_fgenesh1_pg.C_3060021 Physcomitrella patens estExt_fgenesh1_pg.C_3060021 I
estExt_fgenesh1_pg.C_4900005 Physcomitrella patens estExt_fgenesh1_pg.C_4900005 I
estExt_fgenesh2_pg.C_1120045 Physcomitrella patens estExt_fgenesh2_pg.C_1120045 I
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N
POPTR_0007s15110 Populus trichocarpa POPTR_0007s15110 I
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N
Pm013132 Prunus mume Pm013132 I
Pm025973 Prunus mume Pm025973 N
PRUPE_ppa005159mg Prunus persica PRUPE_ppa005159mg I
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N
28582.m000316 Ricinus communis 28582.m000316 N
28582.m000317 Ricinus communis 28582.m000317 N
28582.m000318 Ricinus communis 28582.m000318 N
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N
SapurV1A.0703s0050 Salix purpurea SapurV1A.0703s0050 I
Si022099m.g Setaria italica Si022099m.g I
Solyc09g072830.2 Solanum lycopersicum Solyc09g072830.2 I
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N
Sb06g031970 Sorghum bicolor Sb06g031970 I
TCM_024886 Theobroma cacao TCM_024886 N
Traes_3AS_6EEB8D2B2 Triticum aestivum Traes_3AS_6EEB8D2B2 I
TRAES3BF104900050CFD_g Triticum aestivum TRAES3BF104900050CFD_g I
Traes_6BL_5D8EE6802 Triticum aestivum Traes_6BL_5D8EE6802 I
TRIUR3_02291 Triticum urartu TRIUR3_02291 I
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I
GRMZM2G124495 Zea mays GRMZM2G124495 I