Aquca_013_00142 (Aquilegia coerulea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Aquca_013_00142 T334369_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.490 0.624
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.490 0.624
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_013_00142.1 Sox 178 243
Aquca_013_00142.1 Sox 295 361
Aquca_013_00142.1 Sox 423 491

Links

Other Sox family TFs
Other Aquilegia coerulea TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_016_00429 Aquilegia coerulea Aquca_016_00429 N 0.000
fgenesh2_kg.3__2134__AT3G19184.1 Arabidopsis lyrata fgenesh2_kg.3__2134__AT3G19184.1 N 0.000
AT3G19184 Arabidopsis thaliana AT3G19184 N 0.000
Bostr.19424s0744 Boechera stricta Bostr.19424s0744 N 0.000
BRADI1G45517 Brachypodium distachyon BRADI1G45517 N 0.000
Bo6g124000 Brassica oleracea Bo6g124000 N 0.000
Bra035129 Brassica rapa Bra035129 N 0.000
PK25650.1 Cannabis sativa PK25650.1 N 0.000
Cagra.5742s0010 Capsella grandiflora Cagra.5742s0010 N 0.000
Carubv10014420m.g Capsella rubella Carubv10014420m.g N 0.000
Cla016258 Citrullus lanatus Cla016258 N 0.000
Ciclev10029072m.g Citrus clementina Ciclev10029072m.g N 0.000
orange1.1g036915m.g Citrus sinensis orange1.1g036915m.g N 0.000
Cucsa.219930 Cucumis sativus Cucsa.219930 N 0.000
Thhalv10019015m.g Eutrema salsugineum Thhalv10019015m.g N 0.000
Gorai.013G042700 Gossypium raimondii Gorai.013G042700 N 0.000
Gorai.002G131600 Gossypium raimondii Gorai.002G131600 N 0.000
LPERR06G05590 Leersia perrieri LPERR06G05590 N 0.000
Lus10019870.g Linum usitatissimum Lus10019870.g N 0.000
Lus10014044.g Linum usitatissimum Lus10014044.g N 0.000
MTR_3g101520 Medicago truncatula MTR_3g101520 N 0.000
mgf008645m Mimulus guttatus mgf008645m N 0.000
OB06G15600 Oryza brachyantha OB06G15600 N 0.000
ORGLA06G0055700 Oryza glaberrima ORGLA06G0055700 N 0.000
OGLUM06G06330 Oryza glumaepatula OGLUM06G06330 N 0.000
BGIOSGA022464 Oryza indica BGIOSGA022464 N 0.000
OLONG_013315 Oryza longistaminata OLONG_013315 N 0.000
OMERI06G07230 Oryza meridionalis OMERI06G07230 N 0.000
ONIVA06G07020 Oryza nivara ONIVA06G07020 N 0.000
ORUFI06G06290 Oryza rufipogon ORUFI06G06290 N 0.000
OS06G0194400 Oryza sativa OS06G0194400 N 0.000
Pavir.Fb00845 Panicum virgatum Pavir.Fb00845 N 0.000
POPTR_0009s10600 Populus trichocarpa POPTR_0009s10600 N 0.000
POPTR_0009s10590 Populus trichocarpa POPTR_0009s10590 N 0.000
29801.m003200 Ricinus communis 29801.m003200 N 0.000
SapurV1A.0090s0770 Salix purpurea SapurV1A.0090s0770 N 0.000
Si014404m.g Setaria italica Si014404m.g N 0.000
Solyc01g108140.2 Solanum lycopersicum Solyc01g108140.2 N 0.000
PGSC0003DMG400025792 Solanum tuberosum PGSC0003DMG400025792 N 0.000
Sb07g006170 Sorghum bicolor Sb07g006170 N 0.000
TCM_007039 Theobroma cacao TCM_007039 N 0.000
TCM_033870 Theobroma cacao TCM_033870 N 0.000
VIT_03s0063g00620 Vitis vinifera VIT_03s0063g00620 N 0.000
GRMZM2G173321 Zea mays GRMZM2G173321 N 0.000