Bostr.7867s0182 (Boechera stricta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Bostr.7867s0182 T334394_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.590 0.785
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.590 0.785
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7867s0182.1.p Sox 138 206
Bostr.7867s0182.1.p Sox 255 321
Bostr.7867s0182.1.p Sox 379 447

Links

Other Sox family TFs
Other Boechera stricta TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22212 Aegilops tauschii F775_22212 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.000
MYB118 Arabidopsis thaliana AT3G27785 D 0.000
MYB98 Arabidopsis thaliana AT4G18770 D 0.000
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.000
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.000
Bo1g019910 Brassica oleracea Bo1g019910 I 0.000
Bo2g144970 Brassica oleracea Bo2g144970 I 0.000
Bo3g157300 Brassica oleracea Bo3g157300 I 0.000
Bo7g106240 Brassica oleracea Bo7g106240 I 0.000
Bra013346 Brassica rapa Bra013346 I 0.000
Bra020992 Brassica rapa Bra020992 I 0.000
Bra033027 Brassica rapa Bra033027 I 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.000
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.000
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.000
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.000
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
Ca_07482 Cicer arietinum Ca_07482 I 0.000
Ca_17087 Cicer arietinum Ca_17087 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Cla010586 Citrullus lanatus Cla010586 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.000
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.000
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.000
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.000
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.000
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.000
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.000
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
MDP0000199939 Malus domestica MDP0000199939 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.000
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.000
mgf024290m Mimulus guttatus mgf024290m I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.000
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
Pm015681 Prunus mume Pm015681 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
29917.m001977 Ricinus communis 29917.m001977 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
TCM_016909 Theobroma cacao TCM_016909 I 0.000
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.000
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000