CMQ_1115 (Grosmannia clavigera)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 CMQ_1115 T342213_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.898 0.898
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.898 0.898
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.898 0.898
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.814 0.814
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.814 0.814
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.814 0.814
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.814 0.814
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.814 0.814
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.814 0.814
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.814 0.814
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.814 0.814
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.814 0.814
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.814 0.814
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX04187 TBP 89 171
EFX04187 TBP 179 262

Links

Other TBP family TFs
Other Grosmannia clavigera TFs

772 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I
DREB2A Arabidopsis thaliana AT5G05410 D
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I
Bo2g006960 Brassica oleracea Bo2g006960 I
Bra028759 Brassica rapa Bra028759 I
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I
Carubv10023556m.g Capsella rubella Carubv10023556m.g I
Carubv10001099m.g Capsella rubella Carubv10001099m.g I
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I
GLYMA18G43750 Glycine max GLYMA18G43750 I
GLYMA07G19221 Glycine max GLYMA07G19221 I
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I
MDP0000147009 Malus domestica MDP0000147009 I
MDP0000165880 Malus domestica MDP0000165880 I
MDP0000446783 Malus domestica MDP0000446783 I
cassava46663.m1 Manihot esculenta cassava46663.m1 I
Pm018989 Prunus mume Pm018989 I
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I
TCM_021596 Theobroma cacao TCM_021596 I