OMERI03G24790 (Oryza meridionalis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 OMERI03G24790 T342763_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.862 0.862
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.862 0.862
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.862 0.862
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.838 0.838
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.838 0.838
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.838 0.838
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.838 0.838
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.838 0.838
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.838 0.838
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.838 0.838
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.838 0.838
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.838 0.838
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI03G24790.2 TBP 25 107
OMERI03G24790.2 TBP 115 198

Links

Other TBP family TFs
Other Oryza meridionalis TFs

765 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002052 Ailuropoda melanoleuca ENSAMEG00000002052 I
ENSAPLG00000012134 Anas platyrhynchos ENSAPLG00000012134 I
MECOM Anolis carolinensis ENSACAG00000015620 I
Afo_R003945 Aptenodytes forsteri Afo_R003945 I
ENSP00000417899-D1 Bos grunniens ENSP00000417899-D1 I
MECOM Bos taurus ENSBTAG00000005871 I
Brh_R009954 Buceros rhinoceros Brh_R009954 I
MECOM Callithrix jacchus ENSCJAG00000002651 I
Aan_R014069 Calypte anna Aan_R014069 I
MECOM Canis familiaris ENSCAFG00000014621 I
MECOM Cavia porcellus ENSCPOG00000013572 I
Cmyd_10009299 Chelonia mydas Cmyd_10009299 I
ENSCSAG00000012539 Chlorocebus sabaeus ENSCSAG00000012539 I
MECOM Dasypus novemcinctus ENSDNOG00000007746 I
MECOM Equus caballus ENSECAG00000020788 I
MECOM Felis catus ENSFCAG00000012665 I
ENSFALG00000008636 Ficedula albicollis ENSFALG00000008636 I
ENSGALG00000009437 Gallus gallus ENSGALG00000009437 I
Gfo_R004540 Geospiza fortis Gfo_R004540 I
MECOM Gorilla gorilla ENSGGOG00000013086 I
MECOM Homo sapiens ENSG00000085276 D
ENSLACG00000017233 Latimeria chalumnae ENSLACG00000017233 I
ENSLOCG00000009557 Lepisosteus oculatus ENSLOCG00000009557 I
MECOM Loxodonta africana ENSLAFG00000011479 I
ENSMMUP00000002995 Macaca fascicularis ENSMMUP00000002995 I
MECOM Macaca mulatta ENSMMUG00000002242 I
MECOM Meleagris gallopavo ENSMGAG00000010302 I
MECOM Monodelphis domestica ENSMODG00000016133 I
ENSMPUG00000017083 Mustela putorius furo ENSMPUG00000017083 I
Mecom Mus musculus ENSMUSG00000027684 D
Myotis_brandtii_MECOM_10024770 Myotis brandtii Myotis_brandtii_MECOM_10024770 I
MECOM Myotis lucifugus ENSMLUG00000015749 I
ENSNLEG00000004964 Nomascus leucogenys ENSNLEG00000004964 I
MECOM Ornithorhynchus anatinus ENSOANG00000007585 I
MECOM Otolemur garnettii ENSOGAG00000012812 I
ENSOARG00000000899 Ovis aries ENSOARG00000000899 I
MECOM Pan troglodytes ENSPTRG00000015601 I
ENSPANG00000001637 Papio anubis ENSPANG00000001637 I
ENSPSIG00000004908 Pelodiscus sinensis ENSPSIG00000004908 I
ENSPFOG00000011975 Poecilia formosa ENSPFOG00000011975 I
Pvit_19180 Pogona vitticeps Pvit_19180 I
ENSPPYG00000014277 Pongo abelii ENSPPYG00000014277 I
Mecom Rattus norvegicus ENSRNOG00000012645 I
ENSSHAG00000017530 Sarcophilus harrisii ENSSHAG00000017530 I
ENSTGUG00000011015 Taeniopygia guttata ENSTGUG00000011015 I
MECOM Tursiops truncatus ENSTTRG00000002158 I
Tal_R005471 Tyto alba Tal_R005471 I
B7ZRM8 Xenopus laevis B7ZRM8 I
B7ZRU9 Xenopus laevis B7ZRU9 I
mecom.S Xenopus laevis XB-GENE-6448217 I
mecom.L Xenopus laevis XB-GENE-980198 I
ENSXMAG00000010745 Xiphophorus maculatus ENSXMAG00000010745 I