Pavir.Ib04166 (Panicum virgatum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pavir.Ib04166 T343187_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.776 0.776
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.776 0.776
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.890 0.890
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.827 0.827
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.724 0.724
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.724 0.724
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.724 0.724
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.724 0.724
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.724 0.724
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.724 0.724
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.724 0.724
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.724 0.724
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04166.1.p TBP 9 80
Pavir.Ib04166.1.p TBP 88 171
Pavir.Ib04166.2.p TBP 1 43
Pavir.Ib04166.2.p TBP 51 134

Links

Other TBP family TFs
Other Panicum virgatum TFs

773 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002052 Ailuropoda melanoleuca ENSAMEG00000002052 I
ENSAPLG00000012134 Anas platyrhynchos ENSAPLG00000012134 I
MECOM Anolis carolinensis ENSACAG00000015620 I
Afo_R003945 Aptenodytes forsteri Afo_R003945 I
ENSP00000417899-D1 Bos grunniens ENSP00000417899-D1 I
MECOM Bos taurus ENSBTAG00000005871 I
Brh_R009954 Buceros rhinoceros Brh_R009954 I
MECOM Callithrix jacchus ENSCJAG00000002651 I
Aan_R014069 Calypte anna Aan_R014069 I
MECOM Canis familiaris ENSCAFG00000014621 I
MECOM Cavia porcellus ENSCPOG00000013572 I
Cmyd_10009299 Chelonia mydas Cmyd_10009299 I
ENSCSAG00000012539 Chlorocebus sabaeus ENSCSAG00000012539 I
MECOM Dasypus novemcinctus ENSDNOG00000007746 I
MECOM Equus caballus ENSECAG00000020788 I
MECOM Felis catus ENSFCAG00000012665 I
ENSFALG00000008636 Ficedula albicollis ENSFALG00000008636 I
ENSGALG00000009437 Gallus gallus ENSGALG00000009437 I
Gfo_R004540 Geospiza fortis Gfo_R004540 I
MECOM Gorilla gorilla ENSGGOG00000013086 I
MECOM Homo sapiens ENSG00000085276 D
ENSLACG00000017233 Latimeria chalumnae ENSLACG00000017233 I
ENSLOCG00000009557 Lepisosteus oculatus ENSLOCG00000009557 I
MECOM Loxodonta africana ENSLAFG00000011479 I
ENSMMUP00000002995 Macaca fascicularis ENSMMUP00000002995 I
MECOM Macaca mulatta ENSMMUG00000002242 I
MECOM Meleagris gallopavo ENSMGAG00000010302 I
MECOM Monodelphis domestica ENSMODG00000016133 I
ENSMPUG00000017083 Mustela putorius furo ENSMPUG00000017083 I
Mecom Mus musculus ENSMUSG00000027684 D
Myotis_brandtii_MECOM_10024770 Myotis brandtii Myotis_brandtii_MECOM_10024770 I
MECOM Myotis lucifugus ENSMLUG00000015749 I
ENSNLEG00000004964 Nomascus leucogenys ENSNLEG00000004964 I
MECOM Ornithorhynchus anatinus ENSOANG00000007585 I
MECOM Oryctolagus cuniculus ENSOCUG00000010171 I
MECOM Otolemur garnettii ENSOGAG00000012812 I
ENSOARG00000000899 Ovis aries ENSOARG00000000899 I
MECOM Pan troglodytes ENSPTRG00000015601 I
ENSPANG00000001637 Papio anubis ENSPANG00000001637 I
ENSPSIG00000004908 Pelodiscus sinensis ENSPSIG00000004908 I
ENSPFOG00000011975 Poecilia formosa ENSPFOG00000011975 I
Pvit_19180 Pogona vitticeps Pvit_19180 I
ENSPPYG00000014277 Pongo abelii ENSPPYG00000014277 I
Mecom Rattus norvegicus ENSRNOG00000012645 I
ENSSHAG00000017530 Sarcophilus harrisii ENSSHAG00000017530 I
ENSTGUG00000011015 Taeniopygia guttata ENSTGUG00000011015 I
MECOM Tursiops truncatus ENSTTRG00000002158 I
Tal_R005471 Tyto alba Tal_R005471 I
B7ZRM8 Xenopus laevis B7ZRM8 I
B7ZRU9 Xenopus laevis B7ZRU9 I
mecom.S Xenopus laevis XB-GENE-6448217 I
mecom.L Xenopus laevis XB-GENE-980198 I
ENSXMAG00000010745 Xiphophorus maculatus ENSXMAG00000010745 I