PK11932.1 (Cannabis sativa)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 PK11932.1 T343216_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.872 0.872
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.872 0.872
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.872 0.872
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.853 0.853
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.853 0.853
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.853 0.853
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.853 0.853
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.853 0.853
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.853 0.853
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.853 0.853
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.853 0.853
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.853 0.853
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.853 0.853
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK11932.1 TBP 1 76
PK11932.1 TBP 84 163

Links

Other TBP family TFs
Other Cannabis sativa TFs

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I
ERF023 Arabidopsis thaliana AT1G01250 D
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I
Bo5g002600 Brassica oleracea Bo5g002600 I
Bo8g117810 Brassica oleracea Bo8g117810 I
Bra032630 Brassica rapa Bra032630 I
Bra033274 Brassica rapa Bra033274 I
PK15554.1 Cannabis sativa PK15554.1 I
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I
Carubv10010347m.g Capsella rubella Carubv10010347m.g I
Ca_17638 Cicer arietinum Ca_17638 I
Ca_01325 Cicer arietinum Ca_01325 I
Cla012665 Citrullus lanatus Cla012665 I
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I
Cucsa.237150 Cucumis sativus Cucsa.237150 I
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I
GLYMA16G02680 Glycine max GLYMA16G02680 I
GLYMA03G41910 Glycine max GLYMA03G41910 I
GLYMA07G06080 Glycine max GLYMA07G06080 I
GLYMA19G44580 Glycine max GLYMA19G44580 I
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I
cassava32974.m1 Manihot esculenta cassava32974.m1 I
MTR_7g117690 Medicago truncatula MTR_7g117690 I
MTR_8g027465 Medicago truncatula MTR_8g027465 I
mgf020568m Mimulus guttatus mgf020568m I
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I
Pm018354 Prunus mume Pm018354 I
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I
29742.m001400 Ricinus communis 29742.m001400 I
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N
TCM_005130 Theobroma cacao TCM_005130 I
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I