MDP0000228838 (Malus domestica)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 MDP0000228838 T356530_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.861 0.814
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.861 0.814
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.861 0.814
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.861 0.814
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.859 0.814
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.855 0.847
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.855 0.847
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.855 0.847
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.855 0.847
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.855 0.847
WRKY6
M07377_2.00 		Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH		 Dap-seq
OMalley et al.(2016)
WRKY6_col_a 		0.816 0.678
WRKY6
M07378_2.00 		Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN		 Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a 		0.816 0.678
WRKY31
M07408_2.00 		Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN		 Dap-seq
OMalley et al.(2016)
WRKY31_col_a 		0.814 0.678
WRKY31
M07409_2.00 		Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN		 Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a 		0.814 0.678
WRKY42
M07404_2.00 		Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN		 Dap-seq
OMalley et al.(2016)
WRKY42_col_a 		0.812 0.661
WRKY42
M07405_2.00 		Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND		 Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a 		0.812 0.661
WRKY47
M00732_2.00 		Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN		 PBM
Chang et al.(2013)
pTH7913 		0.811 0.661
WRKY47
M07402_2.00 		Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW		 Dap-seq
OMalley et al.(2016)
WRKY47_col_a 		0.811 0.661
WRKY47
M07403_2.00 		Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a 		0.811 0.661
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000228838 WRKY 110 169

Links

Other WRKY family TFs
Other Malus domestica TFs

781 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_27736 Aegilops tauschii F775_27736 I
Aquca_011_00344 Aquilegia coerulea Aquca_011_00344 I
Aquca_056_00105 Aquilegia coerulea Aquca_056_00105 I
ARR11 Arabidopsis lyrata scaffold_201596.1 I
ARR11 Arabidopsis thaliana AT1G67710 D
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I
Bostr.26959s0139 Boechera stricta Bostr.26959s0139 I
BRADI2G58020 Brachypodium distachyon BRADI2G58020 I
Bo4g157430 Brassica oleracea Bo4g157430 I
Bo6g098710 Brassica oleracea Bo6g098710 I
Bo6g105120 Brassica oleracea Bo6g105120 I
Bra004076 Brassica rapa Bra004076 I
Bra004245 Brassica rapa Bra004245 I
Bra032035 Brassica rapa Bra032035 I
PK07924.1 Cannabis sativa PK07924.1 D
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I
Cagra.2261s0012 Capsella grandiflora Cagra.2261s0012 I
Carubv10020133m.g Capsella rubella Carubv10020133m.g I
Carubv10026052m.g Capsella rubella Carubv10026052m.g I
evm.TU.supercontig_86.17 Carica papaya evm.TU.supercontig_86.17 I
Ca_11309 Cicer arietinum Ca_11309 I
Cla023064 Citrullus lanatus Cla023064 I
Ciclev10031052m.g Citrus clementina Ciclev10031052m.g I
orange1.1g007940m.g Citrus sinensis orange1.1g007940m.g I
orange1.1g027234m.g Citrus sinensis orange1.1g027234m.g I
Cucsa.394720 Cucumis sativus Cucsa.394720 I
Eucgr.H04693 Eucalyptus grandis Eucgr.H04693 I
Eucgr.H04694 Eucalyptus grandis Eucgr.H04694 I
Thhalv10000098m.g Eutrema salsugineum Thhalv10000098m.g I
Thhalv10018396m.g Eutrema salsugineum Thhalv10018396m.g I
GLYMA05G27670 Glycine max GLYMA05G27670 I
GLYMA08G10650 Glycine max GLYMA08G10650 I
GLYMA11G37480 Glycine max GLYMA11G37480 I
GLYMA18G01434 Glycine max GLYMA18G01434 I
Gorai.005G173300 Gossypium raimondii Gorai.005G173300 I
MLOC_11341 Hordeum vulgare MLOC_11341 I
MLOC_23250 Hordeum vulgare MLOC_23250 I
LPERR01G35510 Leersia perrieri LPERR01G35510 I
Lus10006446.g Linum usitatissimum Lus10006446.g I
Lus10011389.g Linum usitatissimum Lus10011389.g I
Lus10019058.g Linum usitatissimum Lus10019058.g I
Lus10036303.g Linum usitatissimum Lus10036303.g I
LjSGA_022114.1 Lotus japonicus LjSGA_022114.1 I
MDP0000305167 Malus domestica MDP0000305167 I
MDP0000307383 Malus domestica MDP0000307383 I
MDP0000320381 Malus domestica MDP0000320381 I
cassava13981.valid.m1 Manihot esculenta cassava13981.valid.m1 I
cassava29171.valid.m1 Manihot esculenta cassava29171.valid.m1 I
cassava32312.m1 Manihot esculenta cassava32312.m1 I
MTR_1g013180 Medicago truncatula MTR_1g013180 I
MTR_3g086100 Medicago truncatula MTR_3g086100 I
MTR_8g079940 Medicago truncatula MTR_8g079940 I
mgf000016m Mimulus guttatus mgf000016m I
mgf001591m Mimulus guttatus mgf001591m I
mgf004388m Mimulus guttatus mgf004388m I
mgf013006m Mimulus guttatus mgf013006m I
mgf014863m Mimulus guttatus mgf014863m I
GSMUA_Achr3G14630_001 Musa acuminata GSMUA_Achr3G14630_001 I
GSMUA_Achr8G32070_001 Musa acuminata GSMUA_Achr8G32070_001 I
OBART01G40940 Oryza barthii OBART01G40940 I
OB01G49660 Oryza brachyantha OB01G49660 I
ORGLA01G0348700 Oryza glaberrima ORGLA01G0348700 I
OGLUM01G45120 Oryza glumaepatula OGLUM01G45120 I
BGIOSGA000304 Oryza indica BGIOSGA000304 I
OLONG_004141 Oryza longistaminata OLONG_004141 I
OMERI01G37950 Oryza meridionalis OMERI01G37950 I
ONIVA01G45980 Oryza nivara ONIVA01G45980 I
OPUNC01G39740 Oryza punctata OPUNC01G39740 I
ORUFI01G44260 Oryza rufipogon ORUFI01G44260 I
RR26 Oryza sativa OS01G0904700 I
Pavir.Ea03527 Panicum virgatum Pavir.Ea03527 I
Pavir.J23046 Panicum virgatum Pavir.J23046 I
PDK_20s1379531g004 Phoenix dactylifera PDK_20s1379531g004 I
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I
POPTR_0008s18130 Populus trichocarpa POPTR_0008s18130 I
POPTR_0010s06290 Populus trichocarpa POPTR_0010s06290 I
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I
Pm006838 Prunus mume Pm006838 I
PRUPE_ppa002679mg Prunus persica PRUPE_ppa002679mg I
29929.m004752 Ricinus communis 29929.m004752 I
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I
SapurV1A.0152s0010 Salix purpurea SapurV1A.0152s0010 I
SapurV1A.0206s0280 Salix purpurea SapurV1A.0206s0280 I
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I
SapurV1A.0629s0180 Salix purpurea SapurV1A.0629s0180 I
Si000815m.g Setaria italica Si000815m.g I
Solyc05g014260.2 Solanum lycopersicum Solyc05g014260.2 I
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I
Solyc12g010330.1 Solanum lycopersicum Solyc12g010330.1 I
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I
PGSC0003DMG400007823 Solanum tuberosum PGSC0003DMG400007823 I
PGSC0003DMG400011980 Solanum tuberosum PGSC0003DMG400011980 I
Sb03g043080 Sorghum bicolor Sb03g043080 I
TCM_010701 Theobroma cacao TCM_010701 I
Traes_3AL_9D2735F60 Triticum aestivum Traes_3AL_9D2735F60 I
Traes_3B_D9F27151E Triticum aestivum Traes_3B_D9F27151E I
TRAES3BF094200030CFD_g Triticum aestivum TRAES3BF094200030CFD_g I
TRAES3BF107400040CFD_g Triticum aestivum TRAES3BF107400040CFD_g I
Traes_3DL_D82CA7827 Triticum aestivum Traes_3DL_D82CA7827 I
ARR11 Vitis vinifera VIT_01s0010g02230 I
VIT_17s0000g10110 Vitis vinifera VIT_17s0000g10110 N
GRMZM2G100318 Zea mays GRMZM2G100318 I
GRMZM2G177220 Zea mays GRMZM2G177220 I
GRMZM2G409974 Zea mays GRMZM2G409974 I