UPC2 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YDR213W T388340_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UPC2
M00920_2.00		 Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN		 PBM
Gordan et al.(2011)
Upc2		 (Direct) (Direct)
UPC2
M07508_2.00		 Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1		 (Direct) (Direct)
UPC2
M08654_2.00		 Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 Misc
DeBoer et al.(2011)
YDR213W_544		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ECM22
M00096_2.00 		Saccharomyces cerevisiae
NNCSGRDNHN
NDNHYCSGNN		 PBM
Badis et al.(2008)
ECM22_2066 		0.541 0.692
ECM22
M00924_2.00 		Saccharomyces cerevisiae
NNDWACGRN
NYCGTWHNN		 PBM
Gordan et al.(2011)
Ecm22 		0.541 0.692
ECM22
M01589_2.00 		Saccharomyces cerevisiae
NNNCGGVN
NBCCGNNN		 PBM
Zhu et al.(2009)
Ecm22 		0.541 0.692
ECM22
M07522_2.00 		Saccharomyces cerevisiae
TCCGGAD
HTCCGGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0292.1 		0.541 0.692
ECM22
M08679_2.00 		Saccharomyces cerevisiae
NNYCGGRNNDMCGGAVNH
DNBTCCGKHNNYCCGRNN		 Misc
DeBoer et al.(2011)
YLR228C_849 		0.541 0.692
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00920_2.00 Zinc cluster 49 88

DNA Binding Domains

Protein ID Domain From To Sequence
YDR213W Zinc cluster 49 88

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.000
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.000
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.000
SIGD Arabidopsis thaliana AT5G13730 N 0.000
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.000
Bo9g166510 Brassica oleracea Bo9g166510 N 0.000
Bra008807 Brassica rapa Bra008807 N 0.000
Bra023430 Brassica rapa Bra023430 N 0.000
PK06863.1 Cannabis sativa PK06863.1 N 0.000
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.000
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.000
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.000
Ca_22857 Cicer arietinum Ca_22857 N 0.000
Cla017559 Citrullus lanatus Cla017559 N 0.000
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.000
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.000
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.000
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.000
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.000
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.000
MDP0000235160 Malus domestica MDP0000235160 N 0.000
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.000
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.000
mgf003626m Mimulus guttatus mgf003626m N 0.000
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.000
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.000
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.000
Pm016510 Prunus mume Pm016510 N 0.000
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.000
29864.m001444 Ricinus communis 29864.m001444 N 0.000
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.000
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.000
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.000
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.000
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.000