Bo8g064940 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo8g064940 T000928_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.706 0.918
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.688 0.918
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.688 0.918
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g064940.1 AP2 13 63

Links

Other AP2 family TFs
Other Brassica oleracea TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra016761 Brassica rapa Bra016761 I 0.812
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.790
PGSC0003DMG400012497 Solanum tuberosum PGSC0003DMG400012497 N 0.724
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.710
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.710
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.706
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.705
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.703
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.702
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.702
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.702
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.701
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.701
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.697
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.697
TCM_016176 Theobroma cacao TCM_016176 I 0.697
Cla011673 Citrullus lanatus Cla011673 I 0.692
MDP0000189347 Malus domestica MDP0000189347 I 0.691
ERF027 Arabidopsis thaliana AT1G12630 D 0.688
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.686
Bo9g036590 Brassica oleracea Bo9g036590 I 0.684
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.680
Bra027616 Brassica rapa Bra027616 I 0.680
Bra027615 Brassica rapa Bra027615 I 0.680
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.680
30147.m014311 Ricinus communis 30147.m014311 I 0.677