scaffold_101390.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_101390.1 T005082_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.746 0.939
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.725 0.918
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.725 0.918
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_101390.1 AP2 13 63

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.766
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.747
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.747
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.746
TCM_016176 Theobroma cacao TCM_016176 I 0.743
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.743
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.743
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.743
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.742
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.739
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.739
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.739
Cla011673 Citrullus lanatus Cla011673 I 0.738
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.733
Cla004491 Citrullus lanatus Cla004491 I 0.728
ERF027 Arabidopsis thaliana AT1G12630 D 0.725
Bo9g036590 Brassica oleracea Bo9g036590 I 0.724
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.720
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.720
Bra027615 Brassica rapa Bra027615 I 0.720
Bra027616 Brassica rapa Bra027616 I 0.720
MDP0000189347 Malus domestica MDP0000189347 I 0.718
30147.m014311 Ricinus communis 30147.m014311 I 0.717
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.715
Bo9g028820 Brassica oleracea Bo9g028820 I 0.714
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.704
Bo8g064940 Brassica oleracea Bo8g064940 I 0.701
Bra016761 Brassica rapa Bra016761 I 0.701
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.699
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.692
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I 0.685
Pm023766 Prunus mume Pm023766 I 0.685
MDP0000262710 Malus domestica MDP0000262710 I 0.682
orange1.1g030591m.g Citrus sinensis orange1.1g030591m.g N 0.679
cassava21336.m1 Manihot esculenta cassava21336.m1 N 0.678
Ciclev10005869m.g Citrus clementina Ciclev10005869m.g N 0.678
orange1.1g028004m.g Citrus sinensis orange1.1g028004m.g N 0.678
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.677
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.677
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.677
OBART02G27750 Oryza barthii OBART02G27750 I 0.677
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.677
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.677
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.677
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.677
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.677
OS02G0676800 Oryza sativa OS02G0676800 I 0.677
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.677
Si018039m.g Setaria italica Si018039m.g I 0.677
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I 0.677
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.677