CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.003G162600
(
Gossypium raimondii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Gorai.003G162600
T008508_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.722
0.898
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.692
0.898
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.692
0.898
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.003G162600.1
AP2
10
60
PMYRGIRCRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALALKGS
Links
Other
AP2
family TFs
Other
Gossypium raimondii
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_016176
Theobroma cacao
TCM_016176
I
0.734
Cagra.6357s0007
Capsella grandiflora
Cagra.6357s0007
I
0.725
Carubv10022214m.g
Capsella rubella
Carubv10022214m.g
I
0.725
AT1G63040
Arabidopsis thaliana
AT1G63040
D
0.722
Cla011673
Citrullus lanatus
Cla011673
I
0.720
fgenesh1_pm.C_scaffold_1001063
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1001063
I
0.715
scaffold_101390.1
Arabidopsis lyrata
scaffold_101390.1
I
0.715
Cucsa.302760
Cucumis sativus
Cucsa.302760
I
0.715
Aquca_013_00433
Aquilegia coerulea
Aquca_013_00433
I
0.714
Carubv10012147m.g
Capsella rubella
Carubv10012147m.g
I
0.714
Thhalv10009659m.g
Eutrema salsugineum
Thhalv10009659m.g
I
0.714
PGSC0003DMG400022759
Solanum tuberosum
PGSC0003DMG400022759
I
0.713
Solyc08g080290.2
Solanum lycopersicum
Solyc08g080290.2
I
0.713
BGIOSGA008802
Oryza indica
BGIOSGA008802
I
0.709
GRMZM2G000520
Zea mays
GRMZM2G000520
I
0.709
LPERR02G22600
Leersia perrieri
LPERR02G22600
I
0.709
OBART02G27750
Oryza barthii
OBART02G27750
I
0.709
OGLUM02G28310
Oryza glumaepatula
OGLUM02G28310
I
0.709
OMERI02G26970
Oryza meridionalis
OMERI02G26970
I
0.709
ONIVA02G30630
Oryza nivara
ONIVA02G30630
I
0.709
OPUNC02G25450
Oryza punctata
OPUNC02G25450
I
0.709
ORUFI02G29210
Oryza rufipogon
ORUFI02G29210
I
0.709
OS02G0676800
Oryza sativa
OS02G0676800
I
0.709
Sb04g031960
Sorghum bicolor
Sb04g031960
I
0.709
Si018039m.g
Setaria italica
Si018039m.g
I
0.709
Cagra.0568s0175
Capsella grandiflora
Cagra.0568s0175
I
0.709
Pavir.Ab02683
Panicum virgatum
Pavir.Ab02683
I
0.709
Bostr.13671s0198
Boechera stricta
Bostr.13671s0198
I
0.706
Cla004491
Citrullus lanatus
Cla004491
I
0.701
Al_scaffold_0002_210
Arabidopsis lyrata
Al_scaffold_0002_210
I
0.696
Al_scaffold_0240_1
Arabidopsis lyrata
Al_scaffold_0240_1
I
0.696
Bra027615
Brassica rapa
Bra027615
I
0.696
Bra027616
Brassica rapa
Bra027616
I
0.696
Bo9g036590
Brassica oleracea
Bo9g036590
I
0.695
30147.m014311
Ricinus communis
30147.m014311
I
0.695
Bo9g028820
Brassica oleracea
Bo9g028820
I
0.693
ERF027
Arabidopsis thaliana
AT1G12630
D
0.692
MDP0000189347
Malus domestica
MDP0000189347
I
0.692
Ciclev10023840m.g
Citrus clementina
Ciclev10023840m.g
I
0.688
GRMZM2G434203
Zea mays
GRMZM2G434203
I
0.687
MLOC_62554
Hordeum vulgare
MLOC_62554
N
0.679
Traes_6DL_FD6D63D1A
Triticum aestivum
Traes_6DL_FD6D63D1A
N
0.679
orange1.1g030591m.g
Citrus sinensis
orange1.1g030591m.g
N
0.678