Cla004491 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla004491 T006418_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.725 0.878
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.696 0.878
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.696 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla004491 AP2 11 61

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.728
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.728
TCM_016176 Theobroma cacao TCM_016176 I 0.728
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.725
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.725
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.725
Cucsa.041590 Cucumis sativus Cucsa.041590 N 0.724
Cla011673 Citrullus lanatus Cla011673 I 0.723
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.718
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.718
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.718
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.718
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.718
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.718
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.713
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.710
Bo9g028820 Brassica oleracea Bo9g028820 I 0.705
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.701
30147.m014311 Ricinus communis 30147.m014311 I 0.699
Bra027615 Brassica rapa Bra027615 I 0.699
Bo9g036590 Brassica oleracea Bo9g036590 I 0.699
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.699
Bra027616 Brassica rapa Bra027616 I 0.699
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.699
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.698
MDP0000189347 Malus domestica MDP0000189347 I 0.696
ERF027 Arabidopsis thaliana AT1G12630 D 0.696
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.677