CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CJA15666
(
Caenorhabditis japonica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CJA15666
T083781_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lin-29
M00613_2.00
Caenorhabditis elegans
WTTTTTTN
NAAAAAAW
PBM
Narasimhan et al.(2015)
pTH9930
0.819
0.991
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA15666
C2H2 ZF
126
148
YKCTQCVKAFANSSYLAQHMRIH
CJA15666
C2H2 ZF
156
177
PCNYCGKKFTQLSHLQQHIRTH
CJA15666
C2H2 ZF
183
207
YKCKFTGCDKAFSQLSNLQSHSRCH
CJA15666
C2H2 ZF
213
235
FKCNSCYKCFTDEQSLLDHIPKH
CJA15666
C2H2 ZF
247
269
HICPFCGKSYTQQTYLQKHMTKH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis japonica
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG02753
Caenorhabditis briggsae
CBG02753
I
0.819
CRE02078
Caenorhabditis remanei
CRE02078
I
0.819
lin-29
Caenorhabditis elegans
WBGene00003015
D
0.819
HCOI02104300
Haemonchus contortus
HCOI02104300
I
0.778
ANCCEY_04897
Ancylostoma ceylanicum
ANCCEY_04897
I
0.778
CBN14672
Caenorhabditis brenneri
CBN14672
I
0.763
CBN28055
Caenorhabditis brenneri
CBN28055
I
0.763
scaffold942-EXSNAP2012.1
Pristionchus exspectatus
scaffold942-EXSNAP2012.1
I
0.760
scaffold83-EXSNAP2012.3
Pristionchus exspectatus
scaffold83-EXSNAP2012.3
I
0.760
Ppa-lin-29
Pristionchus pacificus
PPA19410
I
0.760
nRc.2.0.1.g29712
Romanomermis culicivorax
nRc.2.0.1.g29712
I
0.758