nRc.2.0.1.g29712 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g29712 T155497_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin-29
M00613_2.00 		Caenorhabditis elegans
WTTTTTTN
NAAAAAAW		 PBM
Narasimhan et al.(2015)
pTH9930 		0.766 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t29712-RA C2H2 ZF 61 83
nRc.2.0.1.t29712-RA C2H2 ZF 91 112
nRc.2.0.1.t29712-RA C2H2 ZF 139 163
nRc.2.0.1.t29712-RA C2H2 ZF 169 191
nRc.2.0.1.t29712-RA C2H2 ZF 200 222

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_04897 Ancylostoma ceylanicum ANCCEY_04897 I 0.808
HCOI02104300 Haemonchus contortus HCOI02104300 I 0.808
scaffold83-EXSNAP2012.3 Pristionchus exspectatus scaffold83-EXSNAP2012.3 I 0.798
Ppa-lin-29 Pristionchus pacificus PPA19410 I 0.798
scaffold942-EXSNAP2012.1 Pristionchus exspectatus scaffold942-EXSNAP2012.1 I 0.798
ACYPI006067 Acyrthosiphon pisum ACYPI006067 N 0.778
lin-29 Caenorhabditis elegans WBGene00003015 D 0.766
CBG02753 Caenorhabditis briggsae CBG02753 I 0.766
CRE02078 Caenorhabditis remanei CRE02078 I 0.766
Bm6154 Brugia malayi Bm6154 N 0.760
nDi.2.2.2.g02124 Dirofilaria immitis nDi.2.2.2.g02124 N 0.760
DME_0000431501 Dracunculus medinensis DME_0000431501 N 0.760
WBGene00247150 Onchocerca volvulus WBGene00247150 N 0.760
TCLT_0000227601 Thelazia callipaeda TCLT_0000227601 N 0.760
LOAG_03289 Loa loa LOAG_03289 N 0.760
CJA15666 Caenorhabditis japonica CJA15666 I 0.758