Ppa-lin-29 (Pristionchus pacificus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PPA19410 T127061_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin-29
M00613_2.00 		Caenorhabditis elegans
WTTTTTTN
NAAAAAAW		 PBM
Narasimhan et al.(2015)
pTH9930 		0.768 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA19410 C2H2 ZF 37 64
PPA19410 C2H2 ZF 72 93
PPA19410 C2H2 ZF 99 123
PPA19410 C2H2 ZF 129 151
PPA19410 C2H2 ZF 163 185

Links

Other C2H2 ZF family TFs
Other Pristionchus pacificus TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold83-EXSNAP2012.3 Pristionchus exspectatus scaffold83-EXSNAP2012.3 I 0.827
scaffold942-EXSNAP2012.1 Pristionchus exspectatus scaffold942-EXSNAP2012.1 I 0.827
ANCCEY_04897 Ancylostoma ceylanicum ANCCEY_04897 I 0.810
HCOI02104300 Haemonchus contortus HCOI02104300 I 0.810
nRc.2.0.1.g29712 Romanomermis culicivorax nRc.2.0.1.g29712 I 0.798
ACYPI006067 Acyrthosiphon pisum ACYPI006067 N 0.779
CBG02753 Caenorhabditis briggsae CBG02753 I 0.768
CRE02078 Caenorhabditis remanei CRE02078 I 0.768
lin-29 Caenorhabditis elegans WBGene00003015 D 0.768
CJA15666 Caenorhabditis japonica CJA15666 I 0.760